Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I1114 |
Symbol | vasF |
ID | 6989389 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | - |
Start bp | 1213243 |
End bp | 1214070 |
Gene Length | 828 bp |
Protein Length | 275 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 643379495 |
Product | putative type VI secretion protein VasF |
Protein accession | YP_002262594 |
Protein GI | 209694666 |
COG category | [S] Function unknown |
COG ID | [COG3455] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03349] type IV / VI secretion system protein, DotU family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAGCAGCA TGGATGACCG CACGGTACTT ATTACCCAAG ATCCAAATCA AGTTAGCCCT ACGTTAACTC AGAGCCCCAA TGCCCCAAAG TTTGATCAAT TACAAAATCG AATGGTGTAT GCCGCTCGTA TCAAACCTGA AGAGTACAAC TTTGCTGGCA ACAATCCACT GATTAGCGCC GCATCGTCTT TGCTTTGTAT TACGTGTGAT TTAAAGAAAG AAACGTATCA AGATATAGAT CTACTCAAGC CTAAATTAGT CGAAGAAATT AAATCATTTG AATTCCAAGC TTTAAATTCA GGCGTTGAGA ATAACTACGT CGCACTATCC CGCTATTTAC TGTGCTCTTT TATTGATGAA GTGGTTGTTA CTACACCTTG GGGAGCCGAA AGCCACTGGG CATCACAAAG TATGCTTAGT AGCTTTCACA ATGAAACCTA TGGCGGTGAG AAGTTTTTTC TGTTGCTTGA AAAGCTAAGT CGAAATCCAG CTAAGTATTT AGAATTATTA GAGTTAATGT ATTTATGCTT AAGCTTAGGT TTTGAAGGTA AATACCGCGT TTTATCCCGA GGTTTAATTG AATTAGACGC CATTCGAGAT TCTTTATACC GCCAAATTCG ATCGTTACGT GGTGATGAGA AATCAAGTCT TTCGCCAAAT TGGGAGCCTA AACAAGTGCA ACGACATAAG CTGACAAGAC AAACATCATG GGTAGGCATT GTCTGCGTAG TTCTGTTTTC TTTATGTGCT ATCTATGGTG GTTTTTACTA TGTATTAGAC CAGCAATCAG CTCACGTTAT TCAAGCATTT GAACACATTG AATTATAG
|
Protein sequence | MSSMDDRTVL ITQDPNQVSP TLTQSPNAPK FDQLQNRMVY AARIKPEEYN FAGNNPLISA ASSLLCITCD LKKETYQDID LLKPKLVEEI KSFEFQALNS GVENNYVALS RYLLCSFIDE VVVTTPWGAE SHWASQSMLS SFHNETYGGE KFFLLLEKLS RNPAKYLELL ELMYLCLSLG FEGKYRVLSR GLIELDAIRD SLYRQIRSLR GDEKSSLSPN WEPKQVQRHK LTRQTSWVGI VCVVLFSLCA IYGGFYYVLD QQSAHVIQAF EHIEL
|
| |