| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I1110 |
|---|
| Symbol | |
|---|
| ID | 6988146 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | + |
|---|
| Start bp | 1207732 |
|---|
| End bp | 1208481 |
|---|
| Gene Length | 750 bp |
|---|
| Protein Length | 249 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 643379493 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002262592 |
|---|
| Protein GI | 209694664 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3137] Putative salt-induced outer membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTAGGT TAACTGCGAT AGCATCGTTT ATTTCGGCAC TTACTTTATT TAATTTTTCC
GCCGTAGCGG CAGAAGAAGA TGATGTTTCT GGTGAGTTTA GTGGTGATGC GAAAGTCGGT
TTCATTTATT CAAAAACAGA TGAAACCTCG ATGTCAGTTA ATTCTGGTAT TACTTTAAAG
TATAAAGAAG CACGATGGCA TCATACTGGC GAATTTTCTA CGTATTACAC AAAAGGTAAT
GAAGAGGATG ACGGAACCAA TAAGAATAAG ATAATTTATG ATGTAAAGTA TGACATCACT
GAGAGAATCT TTGCTTTTGG TAATGCGAAA TATGAACATG ACCAATTTGC GACTTATTGT
GAGCAAGCAC TATTAGTCGG CGGTTTTGGT GCGAATATTA TTGATACTGA ACATTCAACA
TTAGATGTCG GGGCGGGGCC TGGTTATAGA TACTCTAAAC GCCAAGTATT TGATGACGAT
TTACCTAATA ATTCAGAAAA AGAAATGATT GCGAACTTTT TTATTGAAGG GCAATCAAAA
ATAACAGATG GCTTAGAAGC TGGTGGTGGT GTCCGTGTCG ATTATGGCAG TTCAAATACA
ACTACAACGA CGCATGTATT CTTAAAGAAT AAGCTAATGG AAAGTTTATC GCTCATGTTA
GACGCTGAAT ATATTTATAA CAGCGTGGTA GCAACAGGGA AGACACACGA TGAGATTTAC
AGTACATTAA GCTTAAATTA TGGCTTTTAA
|
|---|
| Protein sequence | MFRLTAIASF ISALTLFNFS AVAAEEDDVS GEFSGDAKVG FIYSKTDETS MSVNSGITLK
YKEARWHHTG EFSTYYTKGN EEDDGTNKNK IIYDVKYDIT ERIFAFGNAK YEHDQFATYC
EQALLVGGFG ANIIDTEHST LDVGAGPGYR YSKRQVFDDD LPNNSEKEMI ANFFIEGQSK
ITDGLEAGGG VRVDYGSSNT TTTTHVFLKN KLMESLSLML DAEYIYNSVV ATGKTHDEIY
STLSLNYGF
|
|---|
| |