Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I1098 |
Symbol | menF |
ID | 6986847 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | + |
Start bp | 1194026 |
End bp | 1195348 |
Gene Length | 1323 bp |
Protein Length | 440 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 643379484 |
Product | menaquinone-specific isochorismate synthase |
Protein accession | YP_002262584 |
Protein GI | 209694656 |
COG category | [H] Coenzyme transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG1169] Isochorismate synthase |
TIGRFAM ID | [TIGR00543] isochorismate synthases |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.994822 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGTCCACTT TTCAAGATGC CATTGAATCG ATTCGTCATC AAATCGCACA AGCAACATCA TCTCATACCA TTTGTATTGA CTTAGATTGG ACGGTTGGTG ATCAACTTAT TGATTGGCTT GAAGCGCAAC CGATTTACCC TAAGTTTTAT TGGCAATCTC GTGATGGTGA AGAAGAAGTT GCGGTGTTAG GCCAAGTGAA GACCTTTACT GACCCAAAGG CGGCGCAACA AATATTAGCG CCTCAACAAC GAGTGTGGGG CGGGCGATCG TTTGATGGGC GTACTGAACG AAACCGTCGT TGTATGTCTT CTTTTTTCTT TTTGCCTAAA GTTGAAATTA CGCGTTTAAA ATCATCGTGG CATTTCATGG TCAATTTGTC AGATGATAAT TCTCGTTTAT TGTCGACGTT AGATAAGTTA AGTGAGCAAT TTACGCCATT ATCTGAGTTG CATTGCCGTG TTCAACAACG GATCAATACG CCTGAAAAAG AAGATTGGTC GAACATGGTC AATAAAGCGT TGACTGCCAT CTCAAATAAG CAATTTGAAA AGGTGGTATT AGCACGAAAA ACAACACTAA CACTTGACCA ACCGTTGTCG TCTGCACAAT TTTTAAAAGC GAGTCGTAAA GCCAATAGCC ACAGTTTTCA TTTTATGATG GCGTTGGATA GTGAACATTG TTTTATCGGT TCAACCCCTG AGCGTTTATA TGTTCGTAAT GGGTATGCGT TAAAAACAGA AGCGTTAGCG GGAACCATTG GTCGTGGTCA TGATGAAGAA GAAGATGATC AACTTGCATC ATGGTTAATC TCTGACAAGA AAAACCAATA TGAAAACCGT CTTGTGGTGG ATGATATTGT TAATCGCTTA TCTAAATTCA GTCTTTCAAT GAAGGTAGCT GAAAAATCTG AGCTGGTTAA ATTACGTAAA GTTCAACATT TAAAACGTCC AATTTCAGCT GAAATTAATC AAGAATGCAG TGATTCTCAA TTGCTTGATA ATTTACAGCC AACAGCGGCT ATTGCGGGGT TACCTCGCAT GCCTGCATTG GACTTTATTA TTGATAACGA ACCTTTTGCT CGTGGTTGGT ACAGTGGTGC CGTTGGTTTT TTAAGCCAAC AACGCAGTGA GTTTTGTGTC GCGATCCGAA GCGCATTGGT TATGGGCAAT AAACTTCATC TTTTTGCTGG TGCAGGTATC GTTCCTGGTT CAGAGCCAAG CAGTGAATGG GATGAATTAG ATAGAAAGAC ATCAACGTTA TGCACCTTAT TAGAATCTGA TATTACAATG AATCCAGAAA TTACGGAGTC GCAAGTCGCA TGA
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Protein sequence | MSTFQDAIES IRHQIAQATS SHTICIDLDW TVGDQLIDWL EAQPIYPKFY WQSRDGEEEV AVLGQVKTFT DPKAAQQILA PQQRVWGGRS FDGRTERNRR CMSSFFFLPK VEITRLKSSW HFMVNLSDDN SRLLSTLDKL SEQFTPLSEL HCRVQQRINT PEKEDWSNMV NKALTAISNK QFEKVVLARK TTLTLDQPLS SAQFLKASRK ANSHSFHFMM ALDSEHCFIG STPERLYVRN GYALKTEALA GTIGRGHDEE EDDQLASWLI SDKKNQYENR LVVDDIVNRL SKFSLSMKVA EKSELVKLRK VQHLKRPISA EINQECSDSQ LLDNLQPTAA IAGLPRMPAL DFIIDNEPFA RGWYSGAVGF LSQQRSEFCV AIRSALVMGN KLHLFAGAGI VPGSEPSSEW DELDRKTSTL CTLLESDITM NPEITESQVA
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