Gene VSAL_I1087 details

Gene Information

• Locus tag: VSAL_I1087
• Symbol: recR
• ID: 6986838
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011312
• Strand: +
• Start bp: 1182772
• End bp: 1183374
• Gene Length: 603 bp
• Protein Length: 200 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 643379474
• Product: recombination protein RecR
• Protein accession: YP_002262574
• Protein GI: 209694646
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0353] Recombinational DNA repair protein (RecF pathway)
• TIGRFAM ID: [TIGR00615] recombination protein RecR

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGAACCA GTGGTTTATT AGAACAATTA ATGGAATCGT TACGATGCCT TCCCGGTGTT 
GGACCAAAAT CAGCCCAGCG AATGGCATTT CATCTTCTAC AGCGTAATCG ACAAGGTGGT 
ATGCAATTAG CCGATGCACT TTCTCGTGCC ATGTCTGAAA TTGGGCATTG TTCAGAGTGT 
CGAACGTTTA CCGAAGAAGA CACGTGTGCA ATTTGTCTTA ATCCTAAGCG TCAAATGAAC 
GGTGAGCTGT GTATTGTTGA AAGCCCTGCC GATATCGTTG CAGTGGAAGC CACGGGACAA 
TTCTCAGGTC GCTATTTTGT ATTGATGGGG CATTTATCCC CATTAGACGG TATTGGCCCA 
AGTGATATTG GATTGGATTT ACTTGACCAC CGCTTAGGGC GTGGGGACAT TAAAGAAGTC 
ATTCTTGCCA CAAACCCAAC GGTGGAAGGT GAAGCTACGG CGCACTACAT TGCGGAGATA 
TGCCAAGAGC ATCACGTGTC TGCAAGTCGT ATTGCTCACG GTGTGCCAAT GGGAGGTGAG 
TTAGAGTTAG TTGACGGTAC TACGTTGTCT CATTCTATTT TGGGTCGTCA GAAGCTTTAT 
TAG 

 

Protein sequence

MRTSGLLEQL MESLRCLPGV GPKSAQRMAF HLLQRNRQGG MQLADALSRA MSEIGHCSEC 
RTFTEEDTCA ICLNPKRQMN GELCIVESPA DIVAVEATGQ FSGRYFVLMG HLSPLDGIGP 
SDIGLDLLDH RLGRGDIKEV ILATNPTVEG EATAHYIAEI CQEHHVSASR IAHGVPMGGE 
LELVDGTTLS HSILGRQKLY