Gene VSAL_I1003 details

Gene Information

• Locus tag: VSAL_I1003
• ID: 6986774
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011312
• Strand: -
• Start bp: 1107542
• End bp: 1108141
• Gene Length: 600 bp
• Protein Length: 199 aa
• Translation table: 11
• GC content: 37%
• IMG OID: 643379389
• Product: putative HTH-type transcriptional regulator
• Protein accession: YP_002262492
• Protein GI: 209694564
• COG category: [K] Transcription
• COG ID: [COG1309] Transcriptional regulator

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCTCGCA GAAATGACCA TTCTCATCAA GAAATACGTG AAATGGCATT AAATAATGTG 
AAGTTGTATC TTGAAGAACA CTCACATCAT GAACTCAGTT TAAGAAAATT AGCCAAAAGC 
ATTGGTTATG TCCCTAGCAC GCTCGTCAAT ATTTTTGGTA GCTACAATTT ATTACTGCTT 
CGCTCCATTG CCCAAACGCT TGATGAACTG ATGCAACGAA TCGCATTAGG TATAGAAAAT 
AGCACAACAT CAGAAGAAGC ATTAAAAGCC ATTGCTTACT GCTATTACGA CTTTGCAAAA 
CAACACCCTA ATCGCTGGCA GCTAATCTTT GAGCATAATA TGAATGGTGA ATTATTACCG 
GAATGGCAAG AAGACCGCAT CAATCAAATC ATGACAATGC TAGAAAGTAT TATTCGAACC 
ATTAACCCCT CAAAGAGTGA TGGTGATATA GTCGTAACCA GTCGTGTTAT TTGGGCAAGC 
GTTCACGGAA TTACACAATT AAGTGTTGAT GATTTATTTT TCTCTGGCTT ACCATTTGAT 
GGGCACCAAT TAATCGATAA CTTATTTGAT AATTACATTA ATCAGTGGAA GATCAGCTAG 

 

Protein sequence

MARRNDHSHQ EIREMALNNV KLYLEEHSHH ELSLRKLAKS IGYVPSTLVN IFGSYNLLLL 
RSIAQTLDEL MQRIALGIEN STTSEEALKA IAYCYYDFAK QHPNRWQLIF EHNMNGELLP 
EWQEDRINQI MTMLESIIRT INPSKSDGDI VVTSRVIWAS VHGITQLSVD DLFFSGLPFD 
GHQLIDNLFD NYINQWKIS