Gene VSAL_I0933 details

Gene Information

• Locus tag: VSAL_I0933
• Symbol: dxs
• ID: 6986736
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011312
• Strand: -
• Start bp: 1030373
• End bp: 1032256
• Gene Length: 1884 bp
• Protein Length: 627 aa
• Translation table: 11
• GC content: 41%
• IMG OID: 643379326
• Product: 1-deoxy-D-xylulose-5-phosphate synthase
• Protein accession: YP_002262429
• Protein GI: 209694501
• COG category: [H] Coenzyme transport and metabolism; [I] Lipid transport and metabolism
• COG ID: [COG1154] Deoxyxylulose-5-phosphate synthase
• TIGRFAM ID: [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.050049
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCACTTG ATATTTCAAA ATACCCAATT CTGGCTTTGG CAAACACACC AGATGAACTA 
CGTTCTTTGC CAAAAGAAAG CCTACCTGCT TTATGTGATG AGCTTCGTGC TTATCTTTTA 
AAGTCTGTCA GTAAATCGAG TGGCCATTTA GCTTCTGGGC TTGGTGTTGT TGAACTGACT 
GTCGCTTTAC ATTACGTCTA CAATACCCCA TTTGATCAAC TTATTTGGGA TGTAGGCCAT 
CAAGCTTACC CTCATAAGAT CTTAACGGGT CGTCGTGAAA AACTGTCTAC CATTCGTCAA 
AAAGATGGAT TACACCCTTT CCCATGGCGC GATGAAAGCG AATATGATGT GCTTTCTGTT 
GGTCACTCTT CAACTTCGAT AAGCGCCGCT CTGGGTTTAG CTATCTGTGC TGAAAAAGAG 
CAAGCCAATA GAAAAGTCAT TAGTGTTATT GGTGATGGTG CTATTACGGC AGGCATGGCG 
TTTGAAGCAT TAAACCACGC CGGTGATATA CATCCAGATA TGTTAGTTGT CTTAAATGAC 
AATGAGATGT CAATTTCAGA AAATGTTGGC GCACTTAATA ATCAATTAGC TCGCGTATTA 
TCAGGCAGTT TATACACCTC CATTCGTGAA GGTGGTAAAA AAGTACTCTC TGGTACCCCT 
ACGATTAAAG AATTACTTAA GCGTACTGAA GAACATATCA AAGGGATGGT CATTCCTGGA 
ACGATGTTCG AAGAACTAGG CTTTAACTAT ATTGGCCCTG TCGATGGTCA TGATGTAAAC 
GAATTAGTTC GTACTCTTAA GAATATGCGC AACCTAAAAG GTCCGCAGTT CTTACACATT 
ATGACGAAAA AAGGCAAAGG CTATGAGCCT GCAGAAAAAG ATCCTATTAG CTACCATGGT 
GTACCTAAAT TTGATCCAAG CAATCACTCA TTACCGAAGT CATCAGGTGG AAAACCAACG 
TTCTCAAATA TTTTTGGTGA TTTTCTTTGT GATATGGCAA AGGACGATGA CAAATTAATG 
GCCATCACGC CTGCAATGCG TGAAGGATCT GGCATGGTTC GTTTTTCAAA AGAATTCCCA 
GGTCAATATT TTGATACCGC AATTGCAGAG CAACACGCAG TAACGCTAGC CAGTGGTATG 
GCTATCGCAG GTTATAATCC TATTGTCGCC ATTTATTCAA CGTTCTTACA ACGTGGTTAT 
GACCAACTGA TTCATGATGT TGCCATCATG AATTTACCTG TAATGTTTGC TATCGACCGT 
GCTGGTCTGG TTGGTGCCGA TGGTCAAACC CATCAAGGTG CTTTTGACAT CAGCTTTATG 
CGCTGTATTC CAAACATGGT AATTATGACC CCAAGCGATG AAAACGAATG TCGCCAGATG 
CTTTATACGG GACATAAACA TACTGGACCA AGTGCTGTTC GCTATCCTCG AGGAAGTGCG 
ACCGGTATTG AGGTTAATAA AGAGATGCAA GCGTTAGAAA TAGGTAAAGG TCGATTAATC 
CGTGAAACTA AAATCACAGA AAAAGGCGAA CGTGTTGCTA TCTTAAACTT CGGCACCTTT 
TTATCGAACA GTGTAGAAGC AGCAGAAAAA CTAGACGCAA CGGTTGCCGA TATGCGCTTT 
GCTAAACCGT TAGATGAAAC CTTACTTTGT GAGTTAGTCA CAAGCCATGA TGTATTAGTG 
ACCATCGAAG AAAATGCAAT TTCAGGTGGT GCCGGCTCAG GCGTTATTGA GTTCCTAATG 
AAAAACCGTC TAATCAAACC AGTACTTCAA CTTGGCTTAC CTGACCAATT TATTGCTCAA 
GGAACACAAG AAGAAATGCA TGCTGAGTTA ATGTTAGATG CAACAGGTAT TGAAAAACAA 
ATCCGAGATT ATCTGGATTT ATAA 

 

Protein sequence

MSLDISKYPI LALANTPDEL RSLPKESLPA LCDELRAYLL KSVSKSSGHL ASGLGVVELT 
VALHYVYNTP FDQLIWDVGH QAYPHKILTG RREKLSTIRQ KDGLHPFPWR DESEYDVLSV 
GHSSTSISAA LGLAICAEKE QANRKVISVI GDGAITAGMA FEALNHAGDI HPDMLVVLND 
NEMSISENVG ALNNQLARVL SGSLYTSIRE GGKKVLSGTP TIKELLKRTE EHIKGMVIPG 
TMFEELGFNY IGPVDGHDVN ELVRTLKNMR NLKGPQFLHI MTKKGKGYEP AEKDPISYHG 
VPKFDPSNHS LPKSSGGKPT FSNIFGDFLC DMAKDDDKLM AITPAMREGS GMVRFSKEFP 
GQYFDTAIAE QHAVTLASGM AIAGYNPIVA IYSTFLQRGY DQLIHDVAIM NLPVMFAIDR 
AGLVGADGQT HQGAFDISFM RCIPNMVIMT PSDENECRQM LYTGHKHTGP SAVRYPRGSA 
TGIEVNKEMQ ALEIGKGRLI RETKITEKGE RVAILNFGTF LSNSVEAAEK LDATVADMRF 
AKPLDETLLC ELVTSHDVLV TIEENAISGG AGSGVIEFLM KNRLIKPVLQ LGLPDQFIAQ 
GTQEEMHAEL MLDATGIEKQ IRDYLDL