| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I0922 |
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| Symbol | ribD |
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| ID | 6989102 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | + |
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| Start bp | 1020632 |
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| End bp | 1021753 |
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| Gene Length | 1122 bp |
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| Protein Length | 373 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 643379316 |
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| Product | pyrimidine deaminase/pyrimidine reductase (riboflavin biosynthesis protein RibD) |
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| Protein accession | YP_002262419 |
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| Protein GI | 209694491 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0117] Pyrimidine deaminase
[COG1985] Pyrimidine reductase, riboflavin biosynthesis |
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| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAATTTA CTCCTCAAGA TCACTTGATG ATGCAGCGCG CTATTCAATT AGCTAAACGT
GGTATTTATA CGACGGCACC GAATCCAAAT GTGGGCTGCG TACTCGTTAA AAATGGTCTT
ATTGTTGGTG AAGGGGCACA CCTTAAAGCG GGTGAGCCTC ATGCTGAAGT TCATGCTTTA
CGCCAAGCAA GTGAGAATGC GAAGGGGGCA ACGGCTTACG TTACTTTAGA ACCGTGTTCT
CATTATGGTC GAACCCCACC TTGTGCTGAG GGGCTAATAA AAGCAGGCGT AGTAAAAGTT
ATTTGTGCCA TGGTTGATCC AAACCCACAA GTAGCGGGTC GAGGTTTAGC GATGCTAGAA
GCCGCAGGAA TAGAGACAGC GTCGGGCTTA TTAGAAACGG AGTCTCGTGC ACTGAATCCT
TCATTTTTAA CTCGAATGGA AACGGGTAAA CCGTTTGTTC AATTAAAAAT GGCGGCCAGC
TTAGATGGTA AAACAGCGCT GAAAAATGGT GTAAGTCAAT GGATCACATC AAAAGAAGCA
CGACAAGATG TACAGCGTTA TCGTGCACAA GCCGGAGTGA TTCTATCGAC GGCAAAAACG
GTCATTGAGG ATAATGCCTC CCTTAATGTT CGTTGGAGTG ATTTACCTAA TTCAATTCAA
GAATCGTATT TAGAAGCAGA GGTAAGGCAG CCATTACGTG TCATTTTAGA TCGTCAACAT
CAACTTACTT CTGAACTTGC TCTGTTTAAC ACTACTGGGA ACGTGGTTAC CGTTTCTCAC
CAACCTTCAC ATCCTCTTAG CCATCCAGAA AGCCACTTGT ATTGTGATCT TGATAATAAT
AAACAATTAG TATTGTCTGA TGTAATACAA AAAATAGCCC AAGAACATAA TGTAAACCAT
CTTTGGGTTG AAGCTGGTGC AACACTTGCT GCAAGTATGA TTTGCGAAGG TCTGGTCGAT
GAACTTATTA TCTATTTAGC GCCAAAGTTA ATGGGTGCAG ATGGCCGAAG TATAGTGAAC
CTCATCGGAT TAGAAGCGAT GTCTGAAGCA ATTAATTTAG ACATTAGTGA TATTCGAATG
GTCGGCAAAG ATATTCGAAT TACAGCAACA ATAGTAAGGT AA
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| Protein sequence | MKFTPQDHLM MQRAIQLAKR GIYTTAPNPN VGCVLVKNGL IVGEGAHLKA GEPHAEVHAL
RQASENAKGA TAYVTLEPCS HYGRTPPCAE GLIKAGVVKV ICAMVDPNPQ VAGRGLAMLE
AAGIETASGL LETESRALNP SFLTRMETGK PFVQLKMAAS LDGKTALKNG VSQWITSKEA
RQDVQRYRAQ AGVILSTAKT VIEDNASLNV RWSDLPNSIQ ESYLEAEVRQ PLRVILDRQH
QLTSELALFN TTGNVVTVSH QPSHPLSHPE SHLYCDLDNN KQLVLSDVIQ KIAQEHNVNH
LWVEAGATLA ASMICEGLVD ELIIYLAPKL MGADGRSIVN LIGLEAMSEA INLDISDIRM
VGKDIRITAT IVR
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