Gene VSAL_I0921 details

Gene Information

• Locus tag: VSAL_I0921
• Symbol: nrdR
• ID: 6986734
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011312
• Strand: +
• Start bp: 1020181
• End bp: 1020630
• Gene Length: 450 bp
• Protein Length: 149 aa
• Translation table: 11
• GC content: 39%
• IMG OID: 643379315
• Product: transcriptional regulator NrdR
• Protein accession: YP_002262418
• Protein GI: 209694490
• COG category: [K] Transcription
• COG ID: [COG1327] Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains
• TIGRFAM ID: [TIGR00244] transcriptional regulator NrdR

Plasmid Coverage information

• Num covering plasmid clones: 20
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCATTGTC CATTTTGTAG TGCTACAGAC ACAAAAGTTA TCGATTCTCG ATTGGTTTCT 
GATGGTCATC AAGTTCGTCG TCGTCGCCAA TGTTTGGCGT GCAGTGAACG ATTTACTACG 
TTTGAATCCG CTGAACTTGT TATGCCTAAA GTGATTAAGT CTAATGGCAA TCGTGAACCG 
TTTGATGAAG ATAAATTATC GGGTGGTTTG TATCGTTCAT TAGAAAAACG TCCCGTAAGT 
GCTGATTTAG TTGAGCTTGC TTTGAATACA ATTAAATCAA AGCTAAGAGC TACTGGTGAA 
CGTGAAGTAC CTTCGGAGAT GATCGGCAAT TTCGTTATGG ATCAACTAAA GGAACTCGAT 
AAAGTGGCGT ATATTCGATT TGCATCCGTA TATCGTAGCT TTGAAGACAT TAAAGAGTTC 
GGCGAAGAAA TTGCAAAACT AGAGAAATAA 

 

Protein sequence

MHCPFCSATD TKVIDSRLVS DGHQVRRRRQ CLACSERFTT FESAELVMPK VIKSNGNREP 
FDEDKLSGGL YRSLEKRPVS ADLVELALNT IKSKLRATGE REVPSEMIGN FVMDQLKELD 
KVAYIRFASV YRSFEDIKEF GEEIAKLEK