Gene VSAL_I0868 details

Gene Information

• Locus tag: VSAL_I0868
• Symbol: dppD
• ID: 6986695
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011312
• Strand: -
• Start bp: 968844
• End bp: 969854
• Gene Length: 1011 bp
• Protein Length: 336 aa
• Translation table: 11
• GC content: 40%
• IMG OID: 643379269
• Product: dipeptide transport ATP-binding protein DppD
• Protein accession: YP_002262372
• Protein GI: 209694444
• COG category: [E] Amino acid transport and metabolism; [P] Inorganic ion transport and metabolism
• COG ID: [COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
• TIGRFAM ID: [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGATAGAC AAATCATATT GTCAGTGGAA AATGTGATCA CTGAATTTGA AACCGATGAA 
GGGATCATTC GAGTACTTGA TGGTGTCAGT TTTGATGTCC CTAAAGGGAA AACCATTGGC 
ATTGTTGGAG AATCAGGTTG TGGAAAAAGC GTAACAGCAT TGTCTATTAT GGGCTTATTG 
CCTAAGCCTT ACGGCAATGT CGTATCTGGA CAGATTTTAT ATGGTAATAC AAATTTAGTT 
CAACTTAGTC CAAGTCAATT ATATGAAATG CGTGGCAATC ACATTTCGAT GATTTTTCAA 
GATCCAATGA CGGCACTAAA CCCGGTACAT ACGATTGGGA AACAACTCAA TGAAGTGTTG 
GAATTGCATC GCTCTGATTT AAACAAAAAA CAGCGTTTAG CGTATTCTAT CGAAATGCTT 
GAAAAAGTAG GCATGCCATC TCCTGAATCT CGCTTACATG AATACCCTCA TAGTTTATCA 
GGGGGGATGA GGCAGCGAGT GATGATCGCA ATCGCATTAG CGTGTGAGCC AGATATATTG 
ATTTGTGATG AGCCAACGAC GGCACTTGAT GTCACGATTC AAGCGCAAAT TTTAACGTTA 
ATGAAAAAAC TGCAAGACGA GACGGGAATG TCGATCATTT TTATTACTCA TGATCTTGGT 
GTTGTGGCTG AAATCTGTGA CGAAGTGGTG GTGATGTACG CTGGTCGAGT GGCTGAGCAA 
GCTGACATTT TTGAGTTATT TGATAATCCT CTGCATCCTT ATACTCAAGG ATTAATGTCC 
TCAATGCCAA GCTTAAGTTT ACAACCTAAA ACAGAGCTTG AAACCATTCA GGGTACCGTA 
CCATCATTAA ATGAAATGCC TCAAGGGTGT CGCTTCTCTA CTCGTTGTAA ATTCAAACAA 
GACCAATGTG ATTTAGTGGT TCCTGAATTG ACTCAGATTT CACCGTTGCA TAATGTGAGC 
TGTCACTTTT CTGGTCAGTT GATTGAGAAT AAATCAGAGG GGACATTATG A 

 

Protein sequence

MDRQIILSVE NVITEFETDE GIIRVLDGVS FDVPKGKTIG IVGESGCGKS VTALSIMGLL 
PKPYGNVVSG QILYGNTNLV QLSPSQLYEM RGNHISMIFQ DPMTALNPVH TIGKQLNEVL 
ELHRSDLNKK QRLAYSIEML EKVGMPSPES RLHEYPHSLS GGMRQRVMIA IALACEPDIL 
ICDEPTTALD VTIQAQILTL MKKLQDETGM SIIFITHDLG VVAEICDEVV VMYAGRVAEQ 
ADIFELFDNP LHPYTQGLMS SMPSLSLQPK TELETIQGTV PSLNEMPQGC RFSTRCKFKQ 
DQCDLVVPEL TQISPLHNVS CHFSGQLIEN KSEGTL