| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I0802 |
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| Symbol | copA |
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| ID | 6986671 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | - |
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| Start bp | 890523 |
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| End bp | 893231 |
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| Gene Length | 2709 bp |
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| Protein Length | 902 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 643379208 |
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| Product | copper-transporting P-type ATPase |
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| Protein accession | YP_002262312 |
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| Protein GI | 209694384 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG2217] Cation transport ATPase |
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| TIGRFAM ID | [TIGR01494] ATPase, P-type (transporting), HAD superfamily, subfamily IC
[TIGR01511] copper-(or silver)-translocating P-type ATPase
[TIGR01525] heavy metal translocating P-type ATPase |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTCAGA AACTTACCCT ACCCCTAGCG GGATTAAATT GTGGTCGTTG TATCGCAAAA
GTGGAAAAAG CACTTTCAGA GATCCCGAAG ATATCTCATT TCTCGGTAAC CAAAACAGAA
TTAACATTAA CGACGACACT CTCTTATGAA GAAATCGCAG AGAATATTAC GCAATTAGGC
TACTCCATTC CTGAACCCGA ACTCATCACT TTGTACCTAG CAGGATTAAA GTGTGGTAAA
TGCATAAATA AAACCACAGA CACGTTAAGT ACCTTGTCGC ATACCTCTAT TGAGTCTATT
TCAAAAGATA AAATCACGCT AAACACCGTG CACTCTCAAG AAAGCATCAT TGAATTAATT
GAATCCATCG GTTTTCAAGC AAGCTCTGCC CCCTTCATTC CAGATAGTCC CTTACCTAAA
GAAGAGGTCA TTACTCTGAA TAAAGAAACA CCGACAGATC AAAGCAAAAC TGAAAAACAA
AAAATAGAAA AAACAACACA ATTAATTTTA TCGGGAATGA CTTGCGCTAG CTGTGTCGCC
TCTGTAGAAA AAATAATTTC AGCCGTTGCT AATGTTCAAT CTGTCAGTGT TAATTTAGCG
GAACGTACCG CTTTAATTTA TGGTGATATC AATGCACCTG AACTGATCAA AGCAATAGAA
AAAGGCGGTT ATGGTGCAGA GATCAGTTTA AGCGAAGAAC AACGCCGTAA AAGCCAAAAA
GAACAATACC TAAAAACCAC CGTAGCACAT AAAAGAAATA CCATTATGTC GCTCGCAATA
GGCGCGCCAT TGATGCTTTG GGGGGTATTT GGTGGCAACA TGCAAATAAC AACCGTTAAC
GACCAACTTG CTTGGGGACT CATTGGGCTT ATTTGTTTAG GTTTATTACT TACCGCTGGG
AAACATTTTT TTGTTAATGC CTGGAAAGCA TTTACTCATC ACAGAGCGAC AATGGATACG
TTAGTGTCTC TTGGTACTGG TTCAGCTTGG CTCTACTCTA TGGCACTGGT GATCTATCCT
GCATTTTTCC CAGAGCAAGC TCGTCATGTT TATTTTGAAG CCACCGCAAT GATCTTAGGA
TTAATTACGC TCGGAAATCT AATCGAAACC AAAGCTCGTA ATCGCACATC AAATGCCATC
GAAAAGCTGC TCAATCTTCA GCCTCAAACC GCTACGGTTA TCCAAGATGG AAAAGAAGTA
GAGTTGCCAG TGGCACTCGT AACGAAAGGG ATGATCATTA AAATTAAACC GGGAGAGAAA
ATCCCAGTTG ATGGTTCGAT CATCAGCGGT GAAAGCTATT TAGATGAAGC AATGCTTACT
GGAGAGCCTC TTCCTTGTTT AAAAATAAAA GACGATGTTG TGCATGCAGG AACCATCAAT
CAACAGGGTA GCTTTACTTT CACAGCAACG AATGTCGGTG AACATACTAT GCTTGCTCGG
ATCATTGCCA TGGTACGTAA CGCGCAAAGT AGCAAACCAA AACTGGCTAA GCTCGCGGAT
AAAATCTCAT CCGTATTTGT CCCAAGCGTT ATGATCATCG CCATTTTTTC GGCTTTACTT
TGGTATAACT TTGGTCCAGA ACCAACATCG AGCTACATGC TTGTTGTTGC TACAACGGTA
CTCATCATTG CCTGCCCTTG TGCTTTAGGT CTTGCAACAC CAATGTCAGT GACTGTTGGT
GTCGGTAAAG CCGCTGAGTT TGGCGCATTA ATAAAAGACG CTGACGTTTT ACAAACAGCA
AGTCATATCG ATACCGTGGT GGTTGATAAA ACGGGCACAT TAACAGAAGG AAAACCCACG
GTCAGTAAAG TGACAAGCTT TGCGGCTTAC AATGAAAAAG ACATCATTTC ATTCGCAGCA
GCAATCGAAA GTCACTCTGA ACACCCACTC GCTCATGCAG TAATGACATA TCTCAATCAG
CATTCATGGG ATTTAGTCAC CAGTACACAG TTTAATGCTC AATTAGGCCT AGGAGCTTCT
GCAAACATTG CTGGCGAGAC TGTGTTCATA GGAAATACCT CTTATTTATT AAACAATGAG
ATTGCCACTC CTGACGTTGA ATTATCTCCT GCATCAACGC CTCTCTTTGT GGCGATAAAT
AAAGAATGTA TTGGTGTTAT TGAAGTAAGT GATGCAATTC GACCCGATTC AAAACTTGCT
GTAGCCCAAT TTACTCAACT CGGTATTAAT GTCGTAATGC TCACAGGTGA TCGCAAAGAA
ACTGCTAATT ATGTGGCTCA ACAACTCGGA ATAACTCATG TTGTTTCGGG GGTATTACCC
GATGGGAAAG CTCAGACAAT AAAAGACTTA CAAGCTCAAG GAAAGAAAGT AGCTATGATT
GGGGATGGCA TTAATGATGC CCCAGCGTTA GCTCAGGCAG AAGTAGGGAT TGCGATGGGC
AATGGCAGTG ATGTCGCGAT TGAAAGCGCT CAATTGACCT TAATACGACA CTCACTGCTT
ACCGCCGTTA ATGCGATTGA GCTTTCAAGA GCAACCATTA CAAATATGAA ACAGAACTTA
TTCGGTGCCT TTATTTATAA TGCGATAGGC ATTCCTATTG CTGCCGGTAT TCTTTTTTCA
TTTACTGGTA TGTTACTCAG TCCTGTTGTA GCAGGAGCAG CGATGGCACT TTCTTCTATT
ACCGTTGTAT CCAATGCAAA TAGATTACGA CTTTTTAAAT CTCAGTTTTC AAACAAACAT
ACTGACTAG
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| Protein sequence | MSQKLTLPLA GLNCGRCIAK VEKALSEIPK ISHFSVTKTE LTLTTTLSYE EIAENITQLG
YSIPEPELIT LYLAGLKCGK CINKTTDTLS TLSHTSIESI SKDKITLNTV HSQESIIELI
ESIGFQASSA PFIPDSPLPK EEVITLNKET PTDQSKTEKQ KIEKTTQLIL SGMTCASCVA
SVEKIISAVA NVQSVSVNLA ERTALIYGDI NAPELIKAIE KGGYGAEISL SEEQRRKSQK
EQYLKTTVAH KRNTIMSLAI GAPLMLWGVF GGNMQITTVN DQLAWGLIGL ICLGLLLTAG
KHFFVNAWKA FTHHRATMDT LVSLGTGSAW LYSMALVIYP AFFPEQARHV YFEATAMILG
LITLGNLIET KARNRTSNAI EKLLNLQPQT ATVIQDGKEV ELPVALVTKG MIIKIKPGEK
IPVDGSIISG ESYLDEAMLT GEPLPCLKIK DDVVHAGTIN QQGSFTFTAT NVGEHTMLAR
IIAMVRNAQS SKPKLAKLAD KISSVFVPSV MIIAIFSALL WYNFGPEPTS SYMLVVATTV
LIIACPCALG LATPMSVTVG VGKAAEFGAL IKDADVLQTA SHIDTVVVDK TGTLTEGKPT
VSKVTSFAAY NEKDIISFAA AIESHSEHPL AHAVMTYLNQ HSWDLVTSTQ FNAQLGLGAS
ANIAGETVFI GNTSYLLNNE IATPDVELSP ASTPLFVAIN KECIGVIEVS DAIRPDSKLA
VAQFTQLGIN VVMLTGDRKE TANYVAQQLG ITHVVSGVLP DGKAQTIKDL QAQGKKVAMI
GDGINDAPAL AQAEVGIAMG NGSDVAIESA QLTLIRHSLL TAVNAIELSR ATITNMKQNL
FGAFIYNAIG IPIAAGILFS FTGMLLSPVV AGAAMALSSI TVVSNANRLR LFKSQFSNKH
TD
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