| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I0797 |
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| Symbol | nirD |
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| ID | 6986669 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | - |
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| Start bp | 882434 |
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| End bp | 882763 |
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| Gene Length | 330 bp |
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| Protein Length | 109 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 643379202 |
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| Product | nitrite reductase small subunit |
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| Protein accession | YP_002262307 |
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| Protein GI | 209694379 |
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| COG category | [P] Inorganic ion transport and metabolism
[R] General function prediction only |
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| COG ID | [COG2146] Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases |
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| TIGRFAM ID | [TIGR02378] nitrite reductase [NAD(P)H], small subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGACGACTA AATTCCAAAA AATCTGTCCA CTAGACGACA TCATTCCAGG TACAGGCGTT
TGTGCATTAA TTAACGGTGA ACAAGTGGCG ATATTTCGTC CAAACGCTGA TGACCAAGTG
TTTGCCATCA GTAATCGTGA CCCATTTGCA AACTCTAACG TATTGTCTCG CGGCCTTACT
GTTCAACACC AAGGCGAACT TTGGGTTGCA AGCCCATTAA AAAAACAACG CTTTAACCTT
ACTACTGGGG TTTGTATGGA AGACGAACGC TTTAACGTAA AAGCGTATAG CGTTCGAGTC
ATCAAAAACA CTGTAGAAAT CGCAGCATAA
|
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| Protein sequence | MTTKFQKICP LDDIIPGTGV CALINGEQVA IFRPNADDQV FAISNRDPFA NSNVLSRGLT
VQHQGELWVA SPLKKQRFNL TTGVCMEDER FNVKAYSVRV IKNTVEIAA
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