Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I0790 |
Symbol | prfA |
ID | 6988640 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | + |
Start bp | 876495 |
End bp | 877583 |
Gene Length | 1089 bp |
Protein Length | 362 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 643379195 |
Product | peptide chain release factor 1 |
Protein accession | YP_002262300 |
Protein GI | 209694372 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0216] Protein chain release factor A |
TIGRFAM ID | [TIGR00019] peptide chain release factor 1 |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.224449 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAGCAT CAATTCGAGT AAAATTGGAA ACGCTGGTTG AGCGTTATGA AGAAGTACAG CATTTATTGG GGGATCCAGG TGTTATTGGT GATCAAAATA AATTCCGTGC GTTATCTCGT GAATACTCTC AACTGGAAGA AGTAACACAA TGCTTCCAAG CGTATGAAAA AGTACAAGAA GATCTTGTTG CTGCTCAAGA AATGGCACAG GAAGATGATG CTGAAATGCG CGAAATGGCG CAAGACGAAA TTAAAGAAGC GAAAGAAGCA AGTGAACGTC TAACGGATGA ATTACAAGTG CTTCTTATTC CAAAAGATCC AAATGATGAA CGTAACTGTT TCTTAGAGAT CCGTGCCGGT GCTGGTGGTG ATGAAGCGGG TATTTTTGCG GGGAACCTTT TCCGTATGTA TTCTCGTTTT GCTGAGAAAA AAGGGTGGCG TATTGAGGTC ATGAGTTCTC ATGCTTCAGA ACAAGGCGGC TTTAAAGAAA TGATTGCAAA AGTAAGCGGC GATGGCGCTT ATGGTATATT GAAATTTGAA TCAGGTGGTC ACCGAGTTCA ACGTGTACCA GAAACTGAAT CGCAAGGTCG TGTGCATACT TCAGCGTGTA CTATTGCTGT AATGGCTGAA ATTCCAGAAG CGGATTTACC CGAGATTAAA TCGTCTGATT TGAAAATTGA TACTTTCCGT TCATCAGGAG CTGGTGGTCA GCACGTTAAC ACCACCGATT CCGCTATTCG TATTACTCAC TTACCAACGG GTACCGTTGT AGAGTGTCAA GATGAGCGTT CACAGCATAA AAACAAAGCA AAAGCGATGT CGGTTCTTGC TGCCCGTATT ATTCAAGCTG AAGAAGCTCG TCGTGCCGCA GTTGTTTCTG ATACGCGTCG TAATCTATTA GGTTCGGGTG ACCGTTCAGA CCGTATTCGT ACGTACAACT ACCCACAAAG TCGTGTGTCT GATCACCGTA TTAACCTGAC TATCTACCGT TTGAATGAAG TGATGGAAGG GGATCTAGCG GCGTTGATTG AACCTGTCGT ATTAGAATAT CAAGCTGATC AACTAGCGGC TTTAGCTGAA CAAAACTAA
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Protein sequence | MKASIRVKLE TLVERYEEVQ HLLGDPGVIG DQNKFRALSR EYSQLEEVTQ CFQAYEKVQE DLVAAQEMAQ EDDAEMREMA QDEIKEAKEA SERLTDELQV LLIPKDPNDE RNCFLEIRAG AGGDEAGIFA GNLFRMYSRF AEKKGWRIEV MSSHASEQGG FKEMIAKVSG DGAYGILKFE SGGHRVQRVP ETESQGRVHT SACTIAVMAE IPEADLPEIK SSDLKIDTFR SSGAGGQHVN TTDSAIRITH LPTGTVVECQ DERSQHKNKA KAMSVLAARI IQAEEARRAA VVSDTRRNLL GSGDRSDRIR TYNYPQSRVS DHRINLTIYR LNEVMEGDLA ALIEPVVLEY QADQLAALAE QN
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