Gene VSAL_I0721 details

Gene Information

• Locus tag: VSAL_I0721
• Symbol: hscA
• ID: 6988683
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011312
• Strand: +
• Start bp: 804938
• End bp: 806791
• Gene Length: 1854 bp
• Protein Length: 617 aa
• Translation table: 11
• GC content: 41%
• IMG OID: 643379121
• Product: chaperone protein HscA
• Protein accession: YP_002262238
• Protein GI: 209694310
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG0443] Molecular chaperone
• TIGRFAM ID: [TIGR01991] Fe-S protein assembly chaperone HscA

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCATTTC TACAAATTTC TGAACCTGGA CAAAGTGCTG CACCGCATCA ACATAAGTTA 
GCGGTTGGCA TTGATTTAGG AACCACTAAC TCGCTGGTAG CCTCTGTTAG AAGTGGTGAA 
GCGAATACAT TGCCTGATAT GAAAGGTAAC GTGATTCTTC CATCTGTAGT GCAATATCAA 
GATGATAAAA TTTGTGTAGG TGCTAATGCT TACCAATCGG CTGCTTCTGA TCCTCAAAAT 
ACCATTATTT CAGTAAAGCG TTTAATGGGT CGTTCATTGA AAGACATTCA GACTCGTTAT 
CCTGATTTAC CGTATCAATT TACGGAAAGC GATAATGGGT TACCTGTTAT CCATACTACT 
CAGGGTGATG TTAACCCAAT TCAAGTTTCT GCTGAAATTT TAAAATCATT ATCCAATCGC 
GCAGAAGTCA CTTTAGGTGG CAGTCTTGAA GGTGTCGTAA TTACGGTTCC TGCCTATTTT 
GACGATGCTC AACGAGCAGG AACAAAAGAC GCAGCAACAC TTGCGGGTTT AAATGTTCTA 
CGTTTATTAA ATGAACCAAC GGCCGCAGCG ATTGCTTATG GTCTTGATTC TGGTCAAGAA 
GGTATTATTG CGGTTTATGA CCTTGGTGGT GGTACGTTTG ATATTTCAAT ATTACGTTTA 
TCAAAAGGCG TATTTGAAGT ACTAGCTACA GGGGGCGACT CAGCACTCGG TGGTGATGAT 
TTTGACCATG TACTATCCCA ATGGATTAAA GATCAAGCAG AAATTACGAC GGCACTTTCT 
AATCAAGAAC AACGTGAGCT TTTGACATTA GCAACAGAAA CCAAAGTAGC ATTGTCAGAT 
GCCGATTCAG TCACGGTTTC TTTTAAAGAA TGGTCAGGCA CGATTACGGC TGATATCTTT 
AATCAATTAA TTCAATCATT AGTAAAGAAA ACACTAATGG CGTGCCGCCG TGCTCTTAAA 
GATGCCGATA TTAGTTCTGA AGACGTAATG GAAGTGGTCA TGGTTGGTGG TTCAACAAGA 
ACTCCTATCG TTCGACGTTC TGTTGGTGAT TATTTTGCTA AAACACCATT AACCAGTATC 
GATCCTGATC AAGTGGTTGC TATTGGCGCA GCCATTCAAG CGGATATTTT AGTGGGAAAT 
AAACCAGACA CAGAAATGTT ATTACTCGAT GTAATTCCAC TGTCTCTGGG TATTGAAACC 
ATGGGGGGAT TAGTTGAAAA AATTATCCCT CGTAATACCA CGATCCCAGT AGCTAAAGCA 
CAAGAATTTA CGACTTTTAA AGACGGTCAA ACAGGCATGA TGGTTCATGT TGTTCAAGGT 
GAGCGTGAAA TGGTAGAAGA TGGGCGCTCA TTAGCGCGCT TCTCATTGAA AGGCATTCCT 
CCAATGACCG CTGGTGCTGC ACATATTCGA GTGACTTACC AAGTGGATGC CGATGGTCTT 
TTATCTGTTA CGGCAATGGA AAAAAGCACC GGTGTTCAAT CTCATATTCA AGTTAAGCCA 
TCTTATGGCT TGAGTGATAA TGAAGTCGCT ACAATGTTAA AAGATTCTAT GACCTATGCA 
AAAGATGATA TGAAAGCACG AGCACTGGCT GAGCAACAAG TTGAGGCCGA TCGTGTTATC 
GAAGGATTAG TCGTAGCGTT AAATAACGAT GGTGATGCAT TGTTATCGAA AGAAGAACAA 
ACAGTAATAT TACAAGCAGT TGAAGCGTTA ATTACGGTAC GTAAAGGTAC TGATACGCAA 
GCAATTGAAG ACGGAATTAA ACACGCTGAT GAAGCAAGCC AAGAGTTTGC AGCGCGTCGA 
ATGGATGCCT CTATTCGTGC CGCATTAGCT GGTCAATCTA TTGATGAGGT ATAG 

 

Protein sequence

MAFLQISEPG QSAAPHQHKL AVGIDLGTTN SLVASVRSGE ANTLPDMKGN VILPSVVQYQ 
DDKICVGANA YQSAASDPQN TIISVKRLMG RSLKDIQTRY PDLPYQFTES DNGLPVIHTT 
QGDVNPIQVS AEILKSLSNR AEVTLGGSLE GVVITVPAYF DDAQRAGTKD AATLAGLNVL 
RLLNEPTAAA IAYGLDSGQE GIIAVYDLGG GTFDISILRL SKGVFEVLAT GGDSALGGDD 
FDHVLSQWIK DQAEITTALS NQEQRELLTL ATETKVALSD ADSVTVSFKE WSGTITADIF 
NQLIQSLVKK TLMACRRALK DADISSEDVM EVVMVGGSTR TPIVRRSVGD YFAKTPLTSI 
DPDQVVAIGA AIQADILVGN KPDTEMLLLD VIPLSLGIET MGGLVEKIIP RNTTIPVAKA 
QEFTTFKDGQ TGMMVHVVQG EREMVEDGRS LARFSLKGIP PMTAGAAHIR VTYQVDADGL 
LSVTAMEKST GVQSHIQVKP SYGLSDNEVA TMLKDSMTYA KDDMKARALA EQQVEADRVI 
EGLVVALNND GDALLSKEEQ TVILQAVEAL ITVRKGTDTQ AIEDGIKHAD EASQEFAARR 
MDASIRAALA GQSIDEV