| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I0713 |
|---|
| Symbol | truC |
|---|
| ID | 6986618 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | + |
|---|
| Start bp | 799022 |
|---|
| End bp | 799813 |
|---|
| Gene Length | 792 bp |
|---|
| Protein Length | 263 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 643379113 |
|---|
| Product | tRNA pseudouridine synthase C |
|---|
| Protein accession | YP_002262230 |
|---|
| Protein GI | 209694302 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.772217 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAACATTA ATAAACACAA TATAAACACT GAAGCGTTGA GCGAAAATGA AGAAAAACCA
AAGCCGATTG AATTAGAGAT CGTGTATCGT GATGACGATT TGATAGCCAT TAATAAACCG
GCAGGAATGC TTGTTCACCG CTCGTGGCTT GATAAACATG AAACCGTATT TGCGATGCAA
ACATTACGAG ATCAAATTGG CCAACATGTT TTTCCATTAC ACCGCTTAGA TAGACCTACA
TCTGGCATTT TGTTTTTTGC GTTATCAAGC GCGGTGGCTG CTCAATTTTC ACCGTTATTT
GCAAGTCGAG AAATTAAAAA AACGTATCAT GCTATTGTGC GTGGCTGGAT AGAAGAGGGG
GATATTCTTG ATTACCCACT TAAAGAACAA TTAGATAAAA TTGCGGATAA AAAGGCGTCA
AAAGACGTTG AGGCAAAAGA AGCAATAACG GAATATAAAC CCTTGGCTAA CGTTGAATTA
CCCTATTCAA CAGGTAAATT CCCAACCAGT CGATATTGCT TGATGGAATT AAAGCCGCAT
ACAGGCAGAA AACATCAGCT ACGTCGTCAC ATGGCGCATT TACGCCACCC AATTGTTGGG
GATACGACTC ATGGCGATAG CAAACATAAT CGATTATTTC AAAATAATTT AGATAGTCAC
CGTTTATTAT TACACGCGTC TGAATTGAGT TTCATTCATC CGAGCACGAA TAAGCATGTT
GTAATAAAAG CGAGTGTTGG TGAAAAGTGG AATAAACTAA TGGCTGATTT TGGGTGGGAA
ATTGAGTTGT GA
|
|---|
| Protein sequence | MNINKHNINT EALSENEEKP KPIELEIVYR DDDLIAINKP AGMLVHRSWL DKHETVFAMQ
TLRDQIGQHV FPLHRLDRPT SGILFFALSS AVAAQFSPLF ASREIKKTYH AIVRGWIEEG
DILDYPLKEQ LDKIADKKAS KDVEAKEAIT EYKPLANVEL PYSTGKFPTS RYCLMELKPH
TGRKHQLRRH MAHLRHPIVG DTTHGDSKHN RLFQNNLDSH RLLLHASELS FIHPSTNKHV
VIKASVGEKW NKLMADFGWE IEL
|
|---|
| |