| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I0708 |
|---|
| Symbol | |
|---|
| ID | 6988290 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | + |
|---|
| Start bp | 794614 |
|---|
| End bp | 795624 |
|---|
| Gene Length | 1011 bp |
|---|
| Protein Length | 336 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 643379108 |
|---|
| Product | HTH-type transcriptional regulator, LacI family |
|---|
| Protein accession | YP_002262225 |
|---|
| Protein GI | 209694297 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1609] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAACAA TTAATGATGT ATGTAAGCTT GCTGGTGTTT CTAAAGCGAC GGTTTCTCGA
GTAATGAATG GGAAAGGGCC GGTAAAGGAA GAAACCAAAA AACTGATTTT TGATGCAATG
GAAACATTGA ACTATAAACC GAGCCTCGTC GCTCAAGCAT TGGCAACAAA TAGTTCAAAT
AGCATTGGTC TTATTGTCTC TTTCTTTGAT GGTTATTATT TTGGTATTTT ACTCAAAGAA
GCAACAAGAA TTGCAGAAGA ATCAGGTAAG CAGTTAATTG TTACTGATGG TCATAACCAA
CTTGAAACCG AAATAGAAGC GATTAATTCA TTAGTTGCTA GAAAGTGTGA TGCTATTTTA
ATTTATAGCC GAACCATGAC AGCGACTGAT TATTGTAAGA TCCAAGAAAC ACTGCCTATT
CCTTTAGTTG TTATTAATAG AACATTACCT GATGGGTTAG GGCATGCTGT TGCTTTTGAT
CAATATGATG CAAGTCGAAT GGCAATAGAG CATCTTATTG AATTAAAACA TAAAAATATT
GCAATTATTA CAATTAGTTT GGCTTCAAGT ACCGGACAAA TAAGATTACA AGGCGCGAAA
GAAACACTAG AAAAACATGG TGTACATTAC GATGAGAGCT TAACCATCGT GAAGCATGGT
AAGTTGGAAG ATGGTTATCA AGCATGCAAA GAATTATTGA GTAAATCAGA TAAAATTACC
GCTATATTTT GTTTTAATGA TCATTTAGCT CTAGGGGCAA TAAAGGCATT AAAAGAAATG
AACCTGCGAG TACCTGAAGA TATTTCAATT GTAGGTATTG ATAATGATGA GATATCCGCG
TTCTTATCTC CTGCATTAAC AACAATTAAT GTTCCAATAC AAGAAATAAC ACAACTAGCA
ATGAATAAAG CATTAGCGTT AATCTCGGAT AAAGACATCA AACCAACAAC CGAAGTATTA
ACTGGGGAAC TTATTATTCG TGATTCTAGT ATATATAATA AAAACAAGTA A
|
|---|
| Protein sequence | MATINDVCKL AGVSKATVSR VMNGKGPVKE ETKKLIFDAM ETLNYKPSLV AQALATNSSN
SIGLIVSFFD GYYFGILLKE ATRIAEESGK QLIVTDGHNQ LETEIEAINS LVARKCDAIL
IYSRTMTATD YCKIQETLPI PLVVINRTLP DGLGHAVAFD QYDASRMAIE HLIELKHKNI
AIITISLASS TGQIRLQGAK ETLEKHGVHY DESLTIVKHG KLEDGYQACK ELLSKSDKIT
AIFCFNDHLA LGAIKALKEM NLRVPEDISI VGIDNDEISA FLSPALTTIN VPIQEITQLA
MNKALALISD KDIKPTTEVL TGELIIRDSS IYNKNK
|
|---|
| |