| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I0703 |
|---|
| Symbol | |
|---|
| ID | 6988358 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | + |
|---|
| Start bp | 790040 |
|---|
| End bp | 791326 |
|---|
| Gene Length | 1287 bp |
|---|
| Protein Length | 428 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 643379103 |
|---|
| Product | PTS system, cellobiose permease IIC component |
|---|
| Protein accession | YP_002262220 |
|---|
| Protein GI | 209694292 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1455] Phosphotransferase system cellobiose-specific component IIC |
|---|
| TIGRFAM ID | [TIGR00359] phosphotransferase system, cellobiose specific, IIC component
[TIGR00410] PTS system, lactose/cellobiose family IIC component |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.236123 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTACGC AAGCGGCAAC GATGCAAAGC ACAATAATGG AGAAGGTAAA CAAAATCCTT
CCTAAGCTCT TAAAGGTAGT GAATTCAAAA CCAATTGTAG CCATTAAAGA AGGCTTCATG
TTAACCATGC CATTGACCAT CATTGGCTCG GTATTCTTGT TATTGGCCTT TGTTCCTATT
GATGGCTATG ACCAATTTAT GGCGGGAATT TTTGGTGCTG AATGGTCAAC ACCATTGTTT
CAAGTTGTTG GCGCTACTTT TGATATTTTG GCACTGATTG GAGCTTTTGG TATTGCGTAT
ACTTACGTGA AGTATGAAGG ACACAATGGC GTAAATGCGG GGGTGTTAGC CATTGTTTCT
TTACTTATCG TAATGAACGC TTTTGTTGTG GCGCCAGATG GCGTGAGGCA CATAGGTGGA
GTGATACCGA AAGCCTTCCT TGGTGGTAAA GGCATGATTG CAGCTATCGT TATTGGTTTA
GTTGTTGGCA TGATTTACTC AATGGCCTTT AACCGTAACT GGGTGATTAA ACTGCCAGAC
AGCGTGCCAG AAGGGGTGTC GAATGCTTTT AAATCGCTTA TTCCTGGTTT TTTAATTATC
ACTCTTGCTT TCTTAACATA CATATTTTTT GAAGTAGTTT TTGAAAGAAC GTTTATTGAG
ACTATTTACC ATATTATTCA AACACCATTA CAAAGTATGT CTGATTCTTT CTTTGGTGCG
GTAGGTATTG CATTGCTTAT TTCTCTACTT TGGTGGTGTG GTGTTCATGG CCCCGTCATT
GTTATGGGAA TTATGGGACC AATCGTAACG GCGAATGCAC TCCATAATCA ATCAATTGTA
AATGCGGGTG AAGTACTGAT TGCAGGTGAG AATGGAAAAA TAGTAACGAA CCAATTTGTT
GACCAATTTA TTACGGTCGG TGGCTCAGGA CTTACCTTCG GCTTAGTGTG TTGCATGGTC
TTATTTGCTC GCTCTGTTCA GTTTAAGCAA TTAGGTCGTC TCTCTTTTAT CCCAGGCATT
TTTAATATCA ATGAGCCCGT AATTTTCGCA ACACCAATCA TCTTTAACCC AATTATGTTT
ATTCCATTTG TGACTGCTCC AGTGCTGTCA GCAATCATGG TTTATACCTC AATTAACATG
GGGTTTGTTG GACCATTCAC GGCCGTTCAA GTGCCATGGA CAACGCCAAT AGTATTGAGT
GGATTTATTG TTGGGGGGGT GGAGTGCCGC TGTATTACAA GTCACCGTGT TCTGTATGAC
GTTATGTGTG TATTTCCCAT TCTTTAA
|
|---|
| Protein sequence | MSTQAATMQS TIMEKVNKIL PKLLKVVNSK PIVAIKEGFM LTMPLTIIGS VFLLLAFVPI
DGYDQFMAGI FGAEWSTPLF QVVGATFDIL ALIGAFGIAY TYVKYEGHNG VNAGVLAIVS
LLIVMNAFVV APDGVRHIGG VIPKAFLGGK GMIAAIVIGL VVGMIYSMAF NRNWVIKLPD
SVPEGVSNAF KSLIPGFLII TLAFLTYIFF EVVFERTFIE TIYHIIQTPL QSMSDSFFGA
VGIALLISLL WWCGVHGPVI VMGIMGPIVT ANALHNQSIV NAGEVLIAGE NGKIVTNQFV
DQFITVGGSG LTFGLVCCMV LFARSVQFKQ LGRLSFIPGI FNINEPVIFA TPIIFNPIMF
IPFVTAPVLS AIMVYTSINM GFVGPFTAVQ VPWTTPIVLS GFIVGGVECR CITSHRVLYD
VMCVFPIL
|
|---|
| |