| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I0683 |
|---|
| Symbol | dcuB |
|---|
| ID | 6989078 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | - |
|---|
| Start bp | 767012 |
|---|
| End bp | 768346 |
|---|
| Gene Length | 1335 bp |
|---|
| Protein Length | 444 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 643379082 |
|---|
| Product | anaerobic c4-dicarboxylate transporter DcuB |
|---|
| Protein accession | YP_002262200 |
|---|
| Protein GI | 209694272 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2704] Anaerobic C4-dicarboxylate transporter |
|---|
| TIGRFAM ID | [TIGR00770] anaerobic c4-dicarboxylate membrane transporter family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.788285 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATATTG ATTTTTGGCT ACAGCTTGCT GTAGTTTTAG GCTGTATCGG TATTGGCGGA
CGATTTGGCG GAGTTGGATT AGGTGCCGCT GGTGGTTTAG GTGTCTGTTT ATTAGTCTTA
GGTTTTGGTC TACAGCCTGC ATCTCCTCCA GTAACGGTAC TACTAATCAT TATCGCTGTA
ATCGCTTGTA CCAGCGTACT ACAAGGCGCT GGCGGTCTCG ATTTTTTAGT TCGTATCGCT
GAAAAACTTC TTCGTAAGAA GCCGAGTGCT ATTACATTTC TCGGCCCTTT AATTTCCTCA
ATGTTTGTTA TTTTTTGTGG TACATCTTAT GTAGCATTCG CAGTTTATCC AGTTATTGCC
GAAGTTGCTG CTGAAGCAAA AATCCGCCCA GAGCGTCCTA TGTCAATGGC TGTTATAGCT
TCAGGTATTG CGATTACAGC AAGCCCAATG AGTGCTGCAA CAGCAGGTAT GATCGCCTCA
CTTTCTCTTT ATGACGTATC CTTCTTCCAA ATCCTTGCCG TTAGTATGCC TGCATTTTTA
ATTGGGGCAT TATGCGGCTG TGCATTCGTA TACAAGCGTG GTTTAGAACT TGAGCAAGAT
CCTGAATTTC AGCGTCGCGT CGCATCAGGT GAATATCAAC TTATTCATGA AGATGTCAAT
TCACCAGAAG AAGAATACAA ACCGTCAACA GGGGTTAAGG CAAGCGTACT TGTGTTCGGA
TTAGGTGTTG CTACTGTTAT TTTATTTGGT ACTTTTAAGA GCCTACTACC ATCTTGGGAT
ATTGACGGTA AAACGGTTGT ACTATCTACA CCGATGCTAA TCCAAATGGT GATGTTAGCC
AGTGCATTAT TTATCATCGT GTTTGCCAAA GTACCAAGTG ACAAGTTTGC ATCAGGATCA
GTATTCCGTT CTGGTCTTAT TGGTGTCGTG GGTGTATTCG GTATTTCTTG GATGACAGGA
ACGTTCTTCA ATGCTTACCA GCCATTCTTT GAAACAACCT TTGAAGGTAT GGTAGAAACA
GCACCAATGA TGTTCGGTTT GATTTTGTTC TGTTTTTCTG CGGTTATCTT TAGCCCATCA
GCAACTGTTT CTGCATTAAT GCCCCTTGGC GCAGCAATGG GGATCCCTCC TGGTTTACTC
GTTGCACTAT ACCCTGCAAC CTGTGGAGAT TTCATAGTTC CAGGTACAGG TCAAATTGGT
TGTTTATCTT TTGACCGTAC AGGCACAACC CGATTAGGCA CTTATGTTAT AAACCATAGT
TACATACTTC CTGGTTTTGT CATGGTTATT TCATCGGTAA CTGCTGGTTA CTTCATTTCA
AAAATTGTTT TTTAA
|
|---|
| Protein sequence | MNIDFWLQLA VVLGCIGIGG RFGGVGLGAA GGLGVCLLVL GFGLQPASPP VTVLLIIIAV
IACTSVLQGA GGLDFLVRIA EKLLRKKPSA ITFLGPLISS MFVIFCGTSY VAFAVYPVIA
EVAAEAKIRP ERPMSMAVIA SGIAITASPM SAATAGMIAS LSLYDVSFFQ ILAVSMPAFL
IGALCGCAFV YKRGLELEQD PEFQRRVASG EYQLIHEDVN SPEEEYKPST GVKASVLVFG
LGVATVILFG TFKSLLPSWD IDGKTVVLST PMLIQMVMLA SALFIIVFAK VPSDKFASGS
VFRSGLIGVV GVFGISWMTG TFFNAYQPFF ETTFEGMVET APMMFGLILF CFSAVIFSPS
ATVSALMPLG AAMGIPPGLL VALYPATCGD FIVPGTGQIG CLSFDRTGTT RLGTYVINHS
YILPGFVMVI SSVTAGYFIS KIVF
|
|---|
| |