| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I0663 |
|---|
| Symbol | |
|---|
| ID | 6989062 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | - |
|---|
| Start bp | 735514 |
|---|
| End bp | 736281 |
|---|
| Gene Length | 768 bp |
|---|
| Protein Length | 255 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 643379057 |
|---|
| Product | outer membrane protein |
|---|
| Protein accession | YP_002262181 |
|---|
| Protein GI | 209694253 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4105] DNA uptake lipoprotein |
|---|
| TIGRFAM ID | [TIGR03302] outer membrane assembly lipoprotein YfiO |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.000502796 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATAACT TAAGTTTTTT TATTCAAGGA TCATTTTCAA GCATGAAACG CTTAACACTT
TCGTCATTAT TAGCCGTATC TTTGCTGGTT GGTTGCTCAA GCAGTGATGA TGTTATCCCT
GATATCCCAC CATCAGAATT ATATTCTCAG GCTCAAATAT CGTTACAGGC CGGTAATTGG
ACAAGTGCGG TTGAACGCCT TGAAGCATTG GATTCTCGCT ACCCTTTTGG TGCCTACTCA
GAGCAGGTTC AGCTCGATCT TATTTACGTA TATTACAAAA ATGATGACTT AGCTCTAGGT
TTAGCCACCA TTGAACGATT TAATCGATTA AACCCAACAA ACCCCAAAGC GGACTGGGTG
CTATACATGA GAGGATTAAC TCACATGGCT CAGGATAGAA GCTTTATGCA TGATCTATTT
AGAGTTAATC GTTCAGATCG AGATCCTGAA CCAGCACGTT CAGCCTTTAA AGATTTTAAA
CGCTTACTTG AGCGTTACCC TGATAGTTTA TATGCAGAAG ATGCTCAAAC TCGTATGTTT
GCGTTAAAAA ATCGTTTAGC CGATTACGAA TTAGCTACCG CAGACTTTTA TTTGCGTAGA
GAAGCATGGA TTTCAGCAAT TAATCGTAGT CAAGAATTAC AAAGAACCTA CCCAGACACT
GAGGCGGCAA GAAAATCATT AACGATTATG CTTTCTGCAT ATAAAGAGCT AAAGCTGGAT
GATGCAATTC AACGTACTGA AGAATTAATC GCATTAAACC CACAATAA
|
|---|
| Protein sequence | MDNLSFFIQG SFSSMKRLTL SSLLAVSLLV GCSSSDDVIP DIPPSELYSQ AQISLQAGNW
TSAVERLEAL DSRYPFGAYS EQVQLDLIYV YYKNDDLALG LATIERFNRL NPTNPKADWV
LYMRGLTHMA QDRSFMHDLF RVNRSDRDPE PARSAFKDFK RLLERYPDSL YAEDAQTRMF
ALKNRLADYE LATADFYLRR EAWISAINRS QELQRTYPDT EAARKSLTIM LSAYKELKLD
DAIQRTEELI ALNPQ
|
|---|
| |