Gene VSAL_I0650 details

Gene Information

• Locus tag: VSAL_I0650
• Symbol: rimM
• ID: 6989203
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011312
• Strand: +
• Start bp: 723147
• End bp: 723674
• Gene Length: 528 bp
• Protein Length: 175 aa
• Translation table: 11
• GC content: 40%
• IMG OID: 643379045
• Product: 16S rRNA-processing protein RimM
• Protein accession: YP_002262169
• Protein GI: 209694241
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0806] RimM protein, required for 16S rRNA processing
• TIGRFAM ID: [TIGR02273] 16S rRNA processing protein RimM

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.182958
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTAAGC AAGACGAAGT AATTGTTGTA GGTAAGTTCG GTGCTTCCTA TGGCATTCGT 
GGATGGTTGA AAGTAGTTTC TTTTACTGAT CAACCTGAAA GCATTTTCGA CTACAAACCT 
TTACTTATTA AAGTAAAAGA TGAGTGGGTC GAGTTTTCAG TCGAAAGCTG GAAACGTCAT 
AAAGGTTTGG TGTGCAAACT GGAAGGGTTA GAAGTTAGAG AAGAAGCTCA AGCTTATACT 
AACCTGGAAA TTGCAGTTAA AGCAGATGCA CTACCTGAGC TGTCAGAAGA TGAATTCTAC 
TGGCGTGAAT TGTTTGGTAT GGAAGTGGTT ACAAGCCAAG GTTACGGCCT AGGTATTGTT 
GACGACATCT TTGAAACCGG ATCAAACGAT GTTCTTGTAG TCAAAGCAAA CCTGAAAGAT 
GCTTTTGGTA AAAAGGAACG TTTGATTCCT TTTATTGATG AGCAAGTGAT CAAAGTAATT 
GATCGTGAGG CTCAACGGAT CGAAGTTGAC TGGGATCCTG GGTTCTAA 

 

Protein sequence

MSKQDEVIVV GKFGASYGIR GWLKVVSFTD QPESIFDYKP LLIKVKDEWV EFSVESWKRH 
KGLVCKLEGL EVREEAQAYT NLEIAVKADA LPELSEDEFY WRELFGMEVV TSQGYGLGIV 
DDIFETGSND VLVVKANLKD AFGKKERLIP FIDEQVIKVI DREAQRIEVD WDPGF