| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I0630 |
|---|
| Symbol | codB |
|---|
| ID | 6988343 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | - |
|---|
| Start bp | 695453 |
|---|
| End bp | 696706 |
|---|
| Gene Length | 1254 bp |
|---|
| Protein Length | 417 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 643379017 |
|---|
| Product | cytosine permease |
|---|
| Protein accession | YP_002262149 |
|---|
| Protein GI | 209694221 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG1457] Purine-cytosine permease and related proteins |
|---|
| TIGRFAM ID | [TIGR00800] NCS1 nucleoside transporter family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.201877 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGCATG ACAATGATTT TAGCTTAGGG CCAGTACCTA AGACGGCCAG AAAAGGCATA
GTATCCCTAA CCCTAGTAAT GCTAGGCCTT ACTTTTTTCT CGGCAAGCAT GTGGACAGGT
GGAGCCCTTG GTACTGGACT CTCTTTTAAT GATTTTTTCC TCGCCGTTCT TATTGGTAAT
TTAATTCTCG GTATATACAC TTCTTTTCTT GGTTACATTG GGGCTTCTAC TGGCCTTTCT
ACTCATCTCC TCGCTCGATT CTCATTTGGT TCTAAAGGTT CTTGGCTCCC TTCTTTACTC
CTTGGCGGAA CCCAAGTCGG TTGGTTTGGT GTTGGTGTTG GTGTTGGTGT TGCCATGTTT
GCCATCCCGG TACAAAAAGC CACAGGTATT GATACAAACA CCCTGATTGT AATTTCAGGT
CTATTAATGA CAGTGACTGT CTATTTTGGT ATTTCAGCGT TGATGATTCT TTCAATGATT
GCTGTTCCTG CTATTTCAAT ACTTGGTGGT TACTCAGTGT TAACCGCCGT CGATAGCGTC
GGTGGTATTA GCGAATTACA AAAAATTCAA CCAACCGAAC CGATGGACTT CTCTATCGCA
CTCGCCATGG TCGTCGGTTC TTTTATTAGT GCAGGCACAT TAACCGCTGA TTTTGTTCGA
TTTGGAAAAA AACCAATGGG GGCCGTTGCG ATTACAATGA TTGCTTTCTT TATTGGTAAC
TCCCTTATGT TTATCTTTGG TGCCGCAGGC GCATCCGTTA CTGGCCAATC AGATATATCT
GAAGTCATGA TCGCACAAGG ACTGTTGATC CCTGCCATCA TTGTTTTAGG ATTAAATATC
TGGACGACAA ACGATAACGC CCTTTACGCA TCAGGCCTTG GTTTCTCAAA TATCACCGGA
TTACCAAGTA AATATGTCTC AATGTTGAAT GGTTTAATCG GTACCATTTG TGCCTTATGG
TTATATAACA ACTTTGTTGG GTGGTTAACT TTCTTATCAT TAGCCATTCC ACCAATTGGT
GGGGTAATTA TTGCGGATTT CTTCCGTAAC CGTAAACGCT ACCATGATTT TAATAATGCC
AAGTTTAAAA CCATTAACTG GGCAGGTATC ATAGCCGTCG TTATTGGCGT TGCCGCCGGT
AAATTCCTAC CTGGAATCGT TCCTTTGAAC GCCGTATTAG GTGGCGCATT AGGTTACTTA
TTGCTGAACC CAATTTTAAA TAAAGAACCA GCGTCTAAAA CAGAAATAGC ATAG
|
|---|
| Protein sequence | MSHDNDFSLG PVPKTARKGI VSLTLVMLGL TFFSASMWTG GALGTGLSFN DFFLAVLIGN
LILGIYTSFL GYIGASTGLS THLLARFSFG SKGSWLPSLL LGGTQVGWFG VGVGVGVAMF
AIPVQKATGI DTNTLIVISG LLMTVTVYFG ISALMILSMI AVPAISILGG YSVLTAVDSV
GGISELQKIQ PTEPMDFSIA LAMVVGSFIS AGTLTADFVR FGKKPMGAVA ITMIAFFIGN
SLMFIFGAAG ASVTGQSDIS EVMIAQGLLI PAIIVLGLNI WTTNDNALYA SGLGFSNITG
LPSKYVSMLN GLIGTICALW LYNNFVGWLT FLSLAIPPIG GVIIADFFRN RKRYHDFNNA
KFKTINWAGI IAVVIGVAAG KFLPGIVPLN AVLGGALGYL LLNPILNKEP ASKTEIA
|
|---|
| |