| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I0613 |
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| Symbol | prfC |
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| ID | 6989103 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | + |
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| Start bp | 675187 |
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| End bp | 676767 |
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| Gene Length | 1581 bp |
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| Protein Length | 526 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 643379001 |
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| Product | peptide chain release factor 3 |
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| Protein accession | YP_002262133 |
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| Protein GI | 209694205 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG4108] Peptide chain release factor RF-3 |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00503] peptide chain release factor 3 |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTTTTT TACAAGAAGT GGGTAAACGT AGAACGTTTG CCATCATTTC TCACCCGGAT
GCGGGTAAAA CAACGATTAC TGAAAAAGTA TTATTATTCG GAAACGCGAT TCAAAAAGCG
GGTACGGTAA AAGGTCGTGG TTCAAACCAG CACGCAAAAT CAGACTGGAT GGAAATGGAA
AAAGAACGTG GTATTTCGGT AACTACGTCA GTAATGCAAT TTCCATTTAA CGGTTGCCTA
GTTAACCTTC TTGATACTCC TGGGCACGAA GACTTCTCTG AAGATACCTA CCGTACATTA
ACGGCGGTTG ATTCTTGCTT AATGGTTATC GATGCCGCGA AAGGTGTCGA AGATCGTACT
CGTAAATTGA TGGAAGTAAC GCGTTTACGT GATACACCAA TCGTCACGTT CATGAACAAA
ATGGACCGTG AAGTACGAGA CCCAATGGAA GTGCTTGATG AAGTAGAAAG CGAGCTAGGT
ATGGCTTGTG CTCCTATTTC ATGGCCGATT GGTTGTGGTA AAGAATTTAA AGGTGTTTAT
CACATTCACC GTGATGAAAC GATCTTGTAT CAATCTGGCC ATGGCCATGA GATCCAAGAA
GTGCGTACGA TCAAAGGCCT TGATAACCCA GAGCTTGATG TTGCAATCGG TAATGAACTT
GCGCTCAGTG TTCGAGAAGA GTTAGAGCTG GTTATTGGTG CTGCTCATGA ATTTGATTTA
GAGCTATTCC TTAAAGGAGA GCTAACGCCA GTCTACTTTG GTACGGCACT AGGTAACTTC
GGTGTTGATC ATATGCTTGA AGGCTTGACG GAATGGGCTC CTGCGCCGCA AACCCGTGAA
GCGACAGAGC GTCCAGTTGA AGCGACAGAA GAAAAATTCT CTGGCTTTGT GTTTAAAATC
CAAGCAAACA TGGATCCTAA ACACCGTGAC CGTATCGCCT TTATGCGAAT CGTGTCTGGT
ACTTATACTC AAGGCATGAA AATGAACCAC GTTCGTACAG GTAAAAACAT CAGTATTTCT
GATGCGGTAA CCTTTATGGC GGGTGATCGT GCTCGTGCTG AAGTAGCCTA TGCGGGTGAT
ATCATTGGCT TGCATAACCA CGGTACTATT CAAATTGGTG ATACCTTTAC TCAAGGTGAA
AATTTGAAAT TCTCAGGGAT CCCTAACTTT GCCCCTGAAC TGTTCCGTCG TATTCGTCTT
CGTGATCCAC TAAAGCAAAA ACAATTGCTG AAAGGACTTG TGCAATTATC TGAAGAAGGT
GCTGTACAGG TTTTTCGTCC ATTACAAAAC AATGATCTGA TCGTTGGTGC GGTTGGTGTT
CTTCAGTTTG ATGTGGTTGT TTCTCGTTTG AAATCTGAAT ATAACGTAGA AGCTATTTAT
GAAGGCATCA GTGTTGCAAC CGCTCGTTGG GTTGAATGTT CTGATGGCAA AATGCAAGAT
GAATTCCAGC GTAAGAATCA AACTAACCTA GCATTAGATG GTGGCAATAA CTTAACGTAT
ATCGCCCCAA CGATGGTTAA TTTGAATTTA GCGATAGAAC GCTTTCCTGA TGTTCAATTT
AGAGCAACGC GTGAACACTA A
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| Protein sequence | MSFLQEVGKR RTFAIISHPD AGKTTITEKV LLFGNAIQKA GTVKGRGSNQ HAKSDWMEME
KERGISVTTS VMQFPFNGCL VNLLDTPGHE DFSEDTYRTL TAVDSCLMVI DAAKGVEDRT
RKLMEVTRLR DTPIVTFMNK MDREVRDPME VLDEVESELG MACAPISWPI GCGKEFKGVY
HIHRDETILY QSGHGHEIQE VRTIKGLDNP ELDVAIGNEL ALSVREELEL VIGAAHEFDL
ELFLKGELTP VYFGTALGNF GVDHMLEGLT EWAPAPQTRE ATERPVEATE EKFSGFVFKI
QANMDPKHRD RIAFMRIVSG TYTQGMKMNH VRTGKNISIS DAVTFMAGDR ARAEVAYAGD
IIGLHNHGTI QIGDTFTQGE NLKFSGIPNF APELFRRIRL RDPLKQKQLL KGLVQLSEEG
AVQVFRPLQN NDLIVGAVGV LQFDVVVSRL KSEYNVEAIY EGISVATARW VECSDGKMQD
EFQRKNQTNL ALDGGNNLTY IAPTMVNLNL AIERFPDVQF RATREH
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