| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I0606 |
|---|
| Symbol | |
|---|
| ID | 6986561 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | - |
|---|
| Start bp | 670270 |
|---|
| End bp | 672309 |
|---|
| Gene Length | 2040 bp |
|---|
| Protein Length | 679 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 643378994 |
|---|
| Product | putative signaling protein |
|---|
| Protein accession | YP_002262126 |
|---|
| Protein GI | 209694198 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTCTTG CTCAAATACA ACATTGGCTT CCTTTACTAA CAGACAATAG CCCCTTCTTG
TTTGCCATTC TGGATTCAGA CCATAAATAC GTTACGGTGA ATAACCGATA TAGTGAGATA
AGTGGATTAA ATCGAGAATC ACTCTGTGGT CGAACTGATC CTGAAATTTT AGGTGAGCAT
TTCTATTCTT CATTAAAATC CTACTATGAC CGAGCATTCA ATGGCGAAAA AATAGAAGCT
GAAATCACCT TAAATGATCA TCGCTTTGAA ACCAGTCTTC ATTTTAGTTT ATTTCCAATA
GAGCAAGATG GTAATACTTA TATTGTATTC CATGCTGTCG ATACATCAGA ACGACAGCTC
TTACTTAATT CATTAGAAGA GAGTGAGTCA AAATATCGTA AGTTAACCGA GCTTCTCACT
GATGCGATTT TCTTATTAGA AGGCGACATC ATCGTTTCTG CCAATACCGC ATCAGCCACA
ATATTAGGGT TTAATAAACC ATCAGAGTTT ATTGGTGAAA GCATTGAACA ATTATTCAGT
TCACCATCAA AAACTAAATC GTTATCTGAA TTAATTACTG CTCTTCCTTC TGAGCAACAG
CTCGTTGTTC GAAGCTCTGC TAATTGTGCA ACTCGTGCTG AATTGAGTTT AAGTGTAGAA
AAGACGCATG TTCTTGGTAG TACCGCTCAT CTGGTTATCC TTAAAAATAA AAAACCAACA
GAAAAAAATG TAACCATTTG CTCACCTCAA GTTGATCTTT TAACTGGGAT TTATAACCGC
CACGGTTTTA CTCATGTTAT TGAAAAAATG ATCAAAGAAG ACATTCCATT TTTCATGCTC
TATCTTGATA TTGATATTGA TATTGATAAT TTTAAAAACA TTAATGACTC TTTAGGCCAC
CACATTGGTG ATAGAGTACT AAAAGAGATA TCGACTCGCT TACAAAAACT GCTACCAAAA
CATGCCGTAG TTGGGCATTT AGGCGGCGAT GAATTTGGCA TTATCTTTCC GAAACCAGAA
CACAATCAAA TCCTTGACCA ACTTGCTGAA AAGATCATTA ACTTAATAAA CCAACCATTT
GATTTAGTAC ACTTTTCAAA ACGATTAGCT TGCTCTATTG GCAGTGTTCA ATACCCTGTA
GATGGAACAG ATGCCCGCAG TTTGCTACAA AATGCAGATA CTGCGATGTA CGAAGCAAAA
GATCGTGGTC GTAATCGTTT GATCAAATTC CATGATCAAA TGAATAAAGA AGCAAGAATG
CGTCTATGGT TAGAAATCGA ATTACAAAAA GCACTGCAAA ATAATGGACT CGAAGTGTGG
TACCAACCAA AAGTAAGTGC CCGTGATTTC AGAATTAATG GTGCAGAAGC CCTCGTTCGT
TGGAAACATC CGGTTGAAGG TTACATTAGC CCCGCTCGAT TTATTCCTGT CGCAGAACGC
TCAGGTTTAA TAGAAACTCT CGGCAAAGTG GTTATGCGTG AGGTTTTCCA AACGGTAAAA
GAATGGGGTA ACCAAGGTAT TTTACCCGGT CGTATTGCTA TCAATTTATC TCCAGCACAA
TTTGGTAATC CACAACTCAT TGAGTATATG GAAAGATTAC TAAAAACGAC CCAAGTCGAT
CCTAATTGCA TTACCTTGGA ATTAACAGAA AGTGCCGTAA TGAGTGATGG TGAACATGCG
ATTCAGATGC TCGATGCCAT TAAAAAACTG GGATTTACAC TGTCGATAGA TGATTTTGGA
ACGGGCTATT CTTCCCTTGC TTACTTAGCA AGATTCCCTG TCGATGAATT AAAAATCGAC
CGTGGTTTCA TTAGTGAAAT TGATACACTA CCAAAACAAA TTACCATTAT TGAAAACGTG
ATTAATCTCG GAAAAAACTT AAATATGGAT ATTATTGCTG AGGGAGTAGA AACAAGACAA
CAAGCAATGC TACTGTCCAG TTTAAATTGT GATTCGATAC AAGGCTTCCA TTTCTATAAG
CCTCAGCCAA AACAAGAGAT TGAAGCGCTA TTAGTACAGA ACAAACGCGC ATCATCCTAG
|
|---|
| Protein sequence | MSLAQIQHWL PLLTDNSPFL FAILDSDHKY VTVNNRYSEI SGLNRESLCG RTDPEILGEH
FYSSLKSYYD RAFNGEKIEA EITLNDHRFE TSLHFSLFPI EQDGNTYIVF HAVDTSERQL
LLNSLEESES KYRKLTELLT DAIFLLEGDI IVSANTASAT ILGFNKPSEF IGESIEQLFS
SPSKTKSLSE LITALPSEQQ LVVRSSANCA TRAELSLSVE KTHVLGSTAH LVILKNKKPT
EKNVTICSPQ VDLLTGIYNR HGFTHVIEKM IKEDIPFFML YLDIDIDIDN FKNINDSLGH
HIGDRVLKEI STRLQKLLPK HAVVGHLGGD EFGIIFPKPE HNQILDQLAE KIINLINQPF
DLVHFSKRLA CSIGSVQYPV DGTDARSLLQ NADTAMYEAK DRGRNRLIKF HDQMNKEARM
RLWLEIELQK ALQNNGLEVW YQPKVSARDF RINGAEALVR WKHPVEGYIS PARFIPVAER
SGLIETLGKV VMREVFQTVK EWGNQGILPG RIAINLSPAQ FGNPQLIEYM ERLLKTTQVD
PNCITLELTE SAVMSDGEHA IQMLDAIKKL GFTLSIDDFG TGYSSLAYLA RFPVDELKID
RGFISEIDTL PKQITIIENV INLGKNLNMD IIAEGVETRQ QAMLLSSLNC DSIQGFHFYK
PQPKQEIEAL LVQNKRASS
|
|---|
| |