| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I0598 |
|---|
| Symbol | infB |
|---|
| ID | 6988925 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | + |
|---|
| Start bp | 659945 |
|---|
| End bp | 662620 |
|---|
| Gene Length | 2676 bp |
|---|
| Protein Length | 891 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 643378985 |
|---|
| Product | translation initiation factor IF-2 |
|---|
| Protein accession | YP_002262118 |
|---|
| Protein GI | 209694190 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0532] Translation initiation factor 2 (IF-2; GTPase) |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00487] translation initiation factor IF-2 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.223745 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAAAGC TTACGGTAAA AGCACTTAGT GAAGACATTG GAACTCCAGT TGACCGCTTA
CTTCAGCAAT TTTCAGATGC TGGTATTAAT AAAAAAGATG GAGACTCTGT TTCTGAAGGT
GAAAAGCAAT CATTGCTTAT TCATCTAAAA AAAGAGCATG GTAGCGCTGA TGAAAGTGCT
TCACCAACCC GTCTCACTCT TCAACGCAAA ACTCGTAGCA CGTTAAGTGT TGCTGGTTCT
GGCGGTAAAA GTAAAGATGT GCAAGTAGAA GTGCGTAAAA AACGTACTTA TGTAAAAGCG
AGCACGCTTG AAGAAGAGAA AAAAACTGAG CAAATGAAAG TAGAGGCTGG AGACAAGGCC
AAACGTGACG CAGAGGAAGC TGCCGTTCGC GAACTTGAAC AAAAGGCTAA ACGTGAAGCG
GAAGAAAAAG CTAAACGTGA AGCAGAAGCA GAAGTCAAAG TAAAGCGTGA CGCAGAACAA
ACAGCGAAAC GCACTAAGAC TGAAAAGGCT AAAAAAGAAA TGACTACTAA AAATGATCAA
GCAAAAACAG AAGCTGATGA ATTGAAACTT CGTCAGGAAA CAGAAGCGAC TCGTAAAGCA
GAAGCAGAAG CTGCAAAACT AGTTGAAGAT GCACGTAAAC TGGCTGAAGA AAACGAAGGC
CGTTGGAAAG AAGAAGAACA AAAGAAAACA GCTGCTGAAA AAACGGCTGA TTATCATGTA
ACAACGTCAA CTCACGCTCG TGAAGCTGAA GATGCAGCTG ACCGTAAAGA TGAGCAACAG
CCACGTCGTC GTAAGAAAAA AGCGAAAGCG GCGCCAGTAG AACGCGGTGG TCGCAACCAA
CGTGGCGGAC GTAACAGAAA ACCTCAAGTT AACAAACCAA CCTCTATGCA ACATGGCTTT
GATAAGTCAG CGACTGTTGC TAAGCAAGAT GTTGCGATTG GTGAAACAAT TATTGTTTCT
GAACTTGCAA ACAAAATGTC AGTTAAAGCA ACTGAAGTAA TTAAAGTTAT GATGAAGATG
GGCGCTATGG CGACTATCAA CCAAGTTATT GACCAAGAAA CTGCAGCATT AGTTGCTGAA
GAAATGGGTC ATAAAGTGGT TCTTCGTAAA GAAAACGAAT TAGAAGAAGC GGTACTGTCT
GATCGTGATA ACAGCGCAAC GGTTGAAGGC CGTGCTCCAG TTGTTACTAT CATGGGTCAC
GTAGACCACG GTAAAACATC TACACTGGAT TACATTCGTC GTGCACACGT TGCTGACGCT
GAAGCTGGTG GTATCACACA ACACATCGGT GCATACCACG TTGAAACTGA CAACGGTATG
ATCACTTTCC TTGATACTCC TGGACACGCA GCCTTTACTG CAATGCGTGC TCGTGGTGCT
CAAGCGACGG ATATCGTTGT TCTTGTTGTT GCTGCAGATG ATGGTGTTAT GCCACAAACA
ATCGAAGCTA TCCAACACGC AAAAGCGGCT GGCGTACCTC TGATTGTTGC TGTAAACAAA
ATCGATAAAG AAGGCGCTAA CCCAGATAAC GTTAAAAATG AGCTTGCTCA ATATGACATT
ATTCCTGAGG AGTGGGGCGG TGAGAACATG TTTGTTCACA TCTCTGCTAA GCAAGGCACT
AACATTGAAG GTCTTCTAGA AGCTATCCTT CTTCAATCTG AAGTACTTGA ATTAACTGCA
GTTAAAGAAG GTATGGCATC AGGTGTTGTT GTTGAATCTC GTCTTGATAA AGGTCGTGGT
CCAGTTGCTA CTGTTCTTGT TCAATCAGGT ACTTTACACA AGGGTGACAT CGTTCTTTGT
GGTCAAGAGT ATGGCCGTGT TCGTGCTATG CGTGATGAAA ACGGTAAAGA CATCGACAGT
GCTGGTCCAT CAATTCCTGT TGAGATTCTT GGTCTTTCAG GCGTTCCAGC ATCAGGTGAT
GAAGCGACTG TTGTTCGTGA TGAGCGTAAA GCTCGTGAAG TTGCGAACTA CCGTCAAGGT
AAATTCCGTG ATGTGAAACT TGCTCGTCAA CAAAAAGCAA AACTAGAAAA CATGTTTGCA
AACATGGAAG CTGGTGAAGT TGCTGAATGT AACGTTGTAC TTAAAGCGGA CGTTCAAGGT
TCTGTTGAAG CGATTGCTGA TTCATTACGT AAACTATCAA CTGACGAAGT TAAAGTTAAC
ATCGTAGGTT CTGGTGTTGG TGGTATTACT GAAACTGATG CAACTCTTGC AGCGGCTTCA
AATGCGATTC TTTTAGGCTT CAACGTACGT GCTGATACAA GTGCACGTCG TACAATCGAA
AATGAAAACC TAGATCTTCG TTACTACTCA ATCATTTACC AATTGATTGA CGAAGTTAAA
CAAGCGATGG GCGGTATGCT TGCTCCTGAA TTCCGTCAAG AAATCATTGG TCTTGCACAA
GTACGTGAAG TATTCAAATC TCCTAAGATT GGTGCTGTTG CTGGTTGTAT GGTTACTGAA
GGTACGATTA AGCGTAACAA CCCAATCCGT GTATTACGTG ACAATATCGT AATTTACGAA
GGTGAACTAG AATCACTACG TCGCTTTAAA GATGACATGC CAGAAGTTAA GAATGGCTAC
GAATGTGGTA TCGGCGTTAA GAACTACAAT GATGTTCGCG TTGGTGACCA AATCGAAGTA
TTCGAAATTG TTGAGATTCA ACGTACTCTT GATTAA
|
|---|
| Protein sequence | MTKLTVKALS EDIGTPVDRL LQQFSDAGIN KKDGDSVSEG EKQSLLIHLK KEHGSADESA
SPTRLTLQRK TRSTLSVAGS GGKSKDVQVE VRKKRTYVKA STLEEEKKTE QMKVEAGDKA
KRDAEEAAVR ELEQKAKREA EEKAKREAEA EVKVKRDAEQ TAKRTKTEKA KKEMTTKNDQ
AKTEADELKL RQETEATRKA EAEAAKLVED ARKLAEENEG RWKEEEQKKT AAEKTADYHV
TTSTHAREAE DAADRKDEQQ PRRRKKKAKA APVERGGRNQ RGGRNRKPQV NKPTSMQHGF
DKSATVAKQD VAIGETIIVS ELANKMSVKA TEVIKVMMKM GAMATINQVI DQETAALVAE
EMGHKVVLRK ENELEEAVLS DRDNSATVEG RAPVVTIMGH VDHGKTSTLD YIRRAHVADA
EAGGITQHIG AYHVETDNGM ITFLDTPGHA AFTAMRARGA QATDIVVLVV AADDGVMPQT
IEAIQHAKAA GVPLIVAVNK IDKEGANPDN VKNELAQYDI IPEEWGGENM FVHISAKQGT
NIEGLLEAIL LQSEVLELTA VKEGMASGVV VESRLDKGRG PVATVLVQSG TLHKGDIVLC
GQEYGRVRAM RDENGKDIDS AGPSIPVEIL GLSGVPASGD EATVVRDERK AREVANYRQG
KFRDVKLARQ QKAKLENMFA NMEAGEVAEC NVVLKADVQG SVEAIADSLR KLSTDEVKVN
IVGSGVGGIT ETDATLAAAS NAILLGFNVR ADTSARRTIE NENLDLRYYS IIYQLIDEVK
QAMGGMLAPE FRQEIIGLAQ VREVFKSPKI GAVAGCMVTE GTIKRNNPIR VLRDNIVIYE
GELESLRRFK DDMPEVKNGY ECGIGVKNYN DVRVGDQIEV FEIVEIQRTL D
|
|---|
| |