Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I0583 |
Symbol | ispH |
ID | 6988501 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | + |
Start bp | 641077 |
End bp | 642021 |
Gene Length | 945 bp |
Protein Length | 314 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 643378968 |
Product | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase |
Protein accession | YP_002262103 |
Protein GI | 209694175 |
COG category | [I] Lipid transport and metabolism [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0761] Penicillin tolerance protein |
TIGRFAM ID | [TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.10044 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAATAG TATTAGCGAA CCCTCGTGGA TTTTGTGCCG GTGTTGATCG TGCCATCAGT ATTGTTGAAC GAGCGCTTGA ATTATATAAA GCCCCTATTT ATGTACGTCA TGAAGTGGTT CATAACCGTT TTGTCGTCGA AGGATTAAAG CAACGCGGTG CTATTTTTGT TGAAGAGTTA AGTGAAGTTC CTGATGATAA TATCGTGATC TTTTCAGCTC ACGGAGTATC TCAAGCAGTG CGTACTGAAG CAAAAGAGCG AGCATTAACG GTATTTGATG CCACTTGTCC ATTAGTAACA AAAGTTCATA TGGAAGTTGC TCGTGCAAGT AAAAAGAGCA TTGAAGTTGT TTTAATTGGT CACGCTGGTC ACCCTGAAGT TGAAGGGACC ATGGGACAAT ATGCGAGTGA AGCTGGTGGA ATGTATTTAG TCGAGACACC TGAGGATGTA GAGAAGCTGA TTGTTCAAGA TCCAAATAAC CTTCATTATG TCAGCCAAAC GACATTATCA GTTGATGAAA CCGCAGATGT TATTGATGAA TTACGCCGTG TATTTCCAAA GATCCAAGGC CCGCGTAAAG ATGATATCTG TTATGCCACA CAAAACCGTC AAGATGCAGT GCGAGATATG GCAGGCCAAG TTGATGTGAT GATCGTTGTG GGGTCTAAAA ATTCATCTAA TTCAAATCGA TTGCGTGAAC TGTCTGAAAA ATTAGGCACA ACGAGTTATC TGATTGATTG CCCAGAAGAG CTGAAAGAAG AATGGTTAAC AAACCAAGCG AAAGTTGGTG TTACTGCCGG CGCATCAGCA CCTGAAGAAT TAGTTAACCA AATCATTGAA CAAGTAAAAG TCTTTGGTGG TACGACTGTG GATGAATTAA AAGGGCGTGA AGAAAACATG TTTTTTGAAG TACCAAAAGA ATTGCAAATT AAAACTGTGT CTTAA
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Protein sequence | MKIVLANPRG FCAGVDRAIS IVERALELYK APIYVRHEVV HNRFVVEGLK QRGAIFVEEL SEVPDDNIVI FSAHGVSQAV RTEAKERALT VFDATCPLVT KVHMEVARAS KKSIEVVLIG HAGHPEVEGT MGQYASEAGG MYLVETPEDV EKLIVQDPNN LHYVSQTTLS VDETADVIDE LRRVFPKIQG PRKDDICYAT QNRQDAVRDM AGQVDVMIVV GSKNSSNSNR LRELSEKLGT TSYLIDCPEE LKEEWLTNQA KVGVTAGASA PEELVNQIIE QVKVFGGTTV DELKGREENM FFEVPKELQI KTVS
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