Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I0581 |
Symbol | lspA |
ID | 6988704 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | + |
Start bp | 640011 |
End bp | 640526 |
Gene Length | 516 bp |
Protein Length | 171 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 643378966 |
Product | lipoprotein signal peptidase |
Protein accession | YP_002262101 |
Protein GI | 209694173 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0597] Lipoprotein signal peptidase |
TIGRFAM ID | [TIGR00077] lipoprotein signal peptidase |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.0620136 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACTAGCG ATAATAAGAC ATTACCGCTG CTTAAAGAAT CTGGACTTCG CTGGCTATGG CTAGCGGGGT TGGTTTTTAT GGCAGACATC AGCATTAAGT TATTTGTGAT GAAAGAGATG ACTTATGGTT GGGCGAACCG AATTGAAGTT TTGCCTTTCT TTAATTTTCT TTACGCTCAT AACTATGGTG CTGCATTTAG CTTTTTAAGT GATCAAGCCG GTTGGCAACG CTGGTTTTTT ACCGGTATTG CTATCGTTGT ATGTGGTTTA CTTGCCTATT GGATGCGCAA AGCACCACAA ACGGACAAGT TAAATAACAT CGCGTATGCA CTGATCATTG GTGGTGCGAT TGGTAATGTG TTTGATCGCT TAGTTCATGG TTTTGTAGTG GATTATCTTG ATTTCTATTG GGGTAGTTAC CATTGGCCAA CGTTCAACTT AGCGGATGCT GCGATTTGTA TTGGTGCGGG ATTGATCATC TTAGATGGGT TTCGTTCTAA TAAAAAAGAA CAATAA
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Protein sequence | MTSDNKTLPL LKESGLRWLW LAGLVFMADI SIKLFVMKEM TYGWANRIEV LPFFNFLYAH NYGAAFSFLS DQAGWQRWFF TGIAIVVCGL LAYWMRKAPQ TDKLNNIAYA LIIGGAIGNV FDRLVHGFVV DYLDFYWGSY HWPTFNLADA AICIGAGLII LDGFRSNKKE Q
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