| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I0562 |
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| Symbol | xerD |
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| ID | 6988515 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | + |
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| Start bp | 616155 |
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| End bp | 617057 |
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| Gene Length | 903 bp |
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| Protein Length | 300 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 643378948 |
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| Product | site-specific tyrosine recombinase XerD |
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| Protein accession | YP_002262083 |
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| Protein GI | 209694155 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | [TIGR02225] tyrosine recombinase XerD |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGTAATGA ATAATGATAT GGCGTTGATC GAGCGTTTTT TAGATACCAT GTGGATGGAA
CGTGGATTAT CTGAAAATAC GTTGTCTTCT TATCGAAACG ATTTAATGAA ATTATTGAAT
TGGTTAGATG AGAATCACTA TAAGTGTGCT TCTATCTCTG CAATGGGATT AAATGAATAC
CAAGCTTATT TAGTTGATAA ACAATATAAG CAAACATCTC GAGCTCGTAT GCTTTCTGCT
TTGCGTCGAT TTTTCCAGTA TTTACATCGT GAAAAAATTA GAGGTGATGA TCCTACCGCG
TTATTAATGA GTCCCAAGTT ACCGCAACGA TTACCGAAAG ATCTAAGTGA AGAACAAGTA
AATGACTTAC TGGAAGCGCC TAATGTCGAT GATCCATTAG AACTCCGTGA TCGCGCTATG
TTAGAACTAC TTTACGCGAC AGGTTTGCGT GTGACGGAAT TAGTGAGTTT AACGATGGAA
AATTTGAGTT TACGTCAAGG TGTCGTACGA GTTACTGGTA AGGGAGATAA AGAGCGTTTG
GTTCCAATGG GAGAGAACGC GGTTTATTGG ATTCAAACAT TTTTAGATCA AGGTCGATCA
ACTCTATTGG GCGAAAAAAG CTCAGATGTG GTTTTTCCTA GTCGACGTGC AAGACAAATG
ACAAGACAGA CATTCTGGCA TCGCATAAAG CATTATGCCG TAATTGCAGG GATTGATACG
GACAAATTAT CGCCTCACGT TTTACGCCAT GCTTTTGCGA CACATTTGCT AAACTATGGG
GCAGATCTTA GAGTCGTACA AATGTTGTTG GGACATAGTG ATCTTTCTAC CACACAAATA
TATACTCATG TAGCAACAGA GCGTTTGAAA CAGATACATC AAGAGCATCA CCCCCGTTCT
TAA
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| Protein sequence | MVMNNDMALI ERFLDTMWME RGLSENTLSS YRNDLMKLLN WLDENHYKCA SISAMGLNEY
QAYLVDKQYK QTSRARMLSA LRRFFQYLHR EKIRGDDPTA LLMSPKLPQR LPKDLSEEQV
NDLLEAPNVD DPLELRDRAM LELLYATGLR VTELVSLTME NLSLRQGVVR VTGKGDKERL
VPMGENAVYW IQTFLDQGRS TLLGEKSSDV VFPSRRARQM TRQTFWHRIK HYAVIAGIDT
DKLSPHVLRH AFATHLLNYG ADLRVVQMLL GHSDLSTTQI YTHVATERLK QIHQEHHPRS
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