| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I0558 |
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| Symbol | srmB |
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| ID | 6988480 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | - |
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| Start bp | 611726 |
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| End bp | 612976 |
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| Gene Length | 1251 bp |
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| Protein Length | 416 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 643378944 |
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| Product | ATP-dependent RNA helicase SrmB |
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| Protein accession | YP_002262079 |
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| Protein GI | 209694151 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.679683 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGATCAAAA CGTTTGCTGA TCTCGATCTA TCCCCTAACC TACTGCGCGC TCTTGAGGAG
ATTGGTTATC AACGTCCAAC TCAAGTTCAG GCTATGGCGA TCCCTGAAGC ATTAGAAGGT
AAAGACATCC TTGCTTCTGC TCCAACTGGA ACTGGTAAAT CTGCGGCTTT TTTACTGCCC
GCTTTACAGC ATCTTGACGA TTTCCCTCGT CGTGATCCAG GTCCTGCGCG TGTATTAATC
CTAACGCCAA CTCGTGAACT TGCTATCCAA GTTGCGGATG AAGCTCGTGA ATTAGCTAAA
TACACTCACC ATAAAGTATT TACTATCACT GGTGGTATCA GCTACCAAGA GCACGCTGAC
ATTCTGGCAA GAACTCAAGA TATTGTGGTA GCAACGCCCG GTCGTTTAAT GGAGTACATC
GAAGCTGAAC GTTTTGATTG TCGTGCCATT GAAACTCTGA TCCTTGATGA AGCCGACCGT
ATGTTAGACA TGGGTTTTGG TCCTGTTGTT GATCGTCTTT CAAAAGAGTG TCGCTGGCGT
AAACAAACCT TCTTGTTCTC TGCAACATTA GAAGGTCGTG GTGTTGATGG TTTTACCGCT
GATCTATTAA ACGAACCAGC AAAAATTGTC GCAGAACCAT CGCGCCGTGA ACGTAAGAAA
ATCACTCAGT GGTATCACCG TGCCGATAGC TTGCCACATA AAATAGAATT ACTGAAAAGC
ATTCTAACGA ACCAAACTGA GCGCGCGATT GTATTTGTAA AAACTCGTGA GCGTCTTGCA
GAACTTCGTG GTCACTTAGA AACAGCTAAG ATTTCATGTG CTTGGTTACA AGGTGAAATG
CCTCAAGAAA GCCGTAACAA TGCAATTTCT CGTTTCCGTG ATGGTAAAGT TAACGTATTG
ATTGCTACAG ATGTTGCTGC TCGTGGCATC GATTTACCCG ATGTTAGTCA TGTCATTAAC
TTTGATATGC CTCGTACAGC AGATGTATAT TTACACCGTA TCGGTCGTAC TGCTCGTGCA
GGTAAAAAAG GCAATGCTGT TTCTTTGATT GAAGCACATG ATCAAAAAAT GATGGAACGC
GTTGGCCGTT ACGTTAAAGA AGAAGATGAA ATAATTAAAG AACGCTTTGT TGAAGGGTTA
AAACCAACAC ATAAAAAAGC GGTATTTAAG AACAAACAAA AGAAAAATGC GAAGAAAAAA
GCGGTGTTAG CAAAGAAAAA TGCACCAAAG AAAAAGAAGA AGAAAAAGTA A
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| Protein sequence | MIKTFADLDL SPNLLRALEE IGYQRPTQVQ AMAIPEALEG KDILASAPTG TGKSAAFLLP
ALQHLDDFPR RDPGPARVLI LTPTRELAIQ VADEARELAK YTHHKVFTIT GGISYQEHAD
ILARTQDIVV ATPGRLMEYI EAERFDCRAI ETLILDEADR MLDMGFGPVV DRLSKECRWR
KQTFLFSATL EGRGVDGFTA DLLNEPAKIV AEPSRRERKK ITQWYHRADS LPHKIELLKS
ILTNQTERAI VFVKTRERLA ELRGHLETAK ISCAWLQGEM PQESRNNAIS RFRDGKVNVL
IATDVAARGI DLPDVSHVIN FDMPRTADVY LHRIGRTARA GKKGNAVSLI EAHDQKMMER
VGRYVKEEDE IIKERFVEGL KPTHKKAVFK NKQKKNAKKK AVLAKKNAPK KKKKKK
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