Gene VSAL_I0554 details

Gene Information

• Locus tag: VSAL_I0554
• Symbol: tktA
• ID: 6986552
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011312
• Strand: +
• Start bp: 605768
• End bp: 607765
• Gene Length: 1998 bp
• Protein Length: 665 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 643378940
• Product: transketolase
• Protein accession: YP_002262075
• Protein GI: 209694147
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG0021] Transketolase
• TIGRFAM ID: [TIGR00232] transketolase, bacterial and yeast

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCTTCAC GTAAACATTT AGCAAATGCA ATCCGCGCTT TAAGCATGGA CGGTGTACAA 
CAAGCAAATT CTGGTCACCC AGGAGCACCA ATGGGCATGG CAGACATCGC TGAAGTATTA 
TGGCGTAGTC ACCTAAATCA CAACCCACAG AATCCAGAGT GGGCTGATCG CGACCGTTTC 
ATTCTTTCTA ACGGCCACGG CTCTATGCTG ATTTATTCTC TGCTTCATCT TTCAGGTTAT 
AACCTGTCTA TCGAAGACTT AAAGAACTTC CGTCAATTGC ATTCTAAAAC TCCGGGTCAC 
CCTGAGTACG GCTATGCACC AGGTATTGAA ACAACAACGG GTCCATTAGG CCAAGGCATC 
ACTAATGGCG TTGGTATGGC AATGGCTGAA AAAGCATTGG CAGCACAATT TAACCGTGAA 
GGCCACGACA TCGTTGACCA TAATACGTAT GTGTTCATGG GCGATGGTTG TTTAATGGAA 
GGTATTTCTC ACGAAGCGTG TTCACTTGCT GGCACACTAG GCCTAGGCAA ACTGGTTGCT 
TTCTGGGATG ACAACGGTAT TTCTATCGAT GGTGAAGTGG AAGGTTGGTT CTCTGACGAT 
ACCCCTAAAC GTTTTGAAGC GTACGGCTGG CATGTAATTC CTGCGGTTGA TGGTCACGAT 
GCTGACGCAA TCAATGCGGC GATTGAAGCG GCAAAAGCAG AAACAGGTCG TCCTACTTTG 
ATTTGTACTA AAACTATCAT CGGTTTTGGT TCTCCAAATA AAGAAGGTAC GCACGACTGT 
CACGGTGCTC CACTAGGTGC TGATGAGATT GTTGCGACTA AAGCGAAACT TGGTTGGGAG 
TTTGGTCCTT TTGACATTCC TACTGATGTA TATGCTGAGT GGAACGCAAA AGAAGCAGGC 
AAAGCAAAAG AAGCGTCTTG GAATGCTAAA TTTGATGCCT ACGCTGCTGC ACACCCTGAA 
CTAGCTGCTG AATATAAGCG TCGTGTCAAC GGTGGTTTAC CTGCTGAGTG GGAAGAAAAA 
ACATCGGCAA TCATTGCTGA TCTTCAAGCT AATCCTGCAA ACATCGCATC ACGTAAAGCA 
TCGCAAAATG CACTAGAAGC GTTTGGTGCA ATGTTACCTG AATTCATGGG CGGCTCTGCT 
GACCTTGCAC CGTCTAACTT GACGATGTGG TCTGGCTCTA AATCATTAAC CGCTGATGAT 
TTCTCTGGTA ACTACATTCA CTACGGTGTA CGTGAATTTG CGATGACAGC AATCATGAAC 
GGTATCGCTC TGCACGGTGG TTTCGTACCC TATGGCGCAA CGTTCCTAAT GTTCATGGAA 
TACGCGCGTA ACGCAATGCG TATGGCTGCA CTGATGAAAA TTCAGAACAT CCAAGTGTAC 
ACTCACGATT CAATCGGTCT AGGTGAAGAT GGTCCAACTC ACCAACCTGT TGAGCAAATC 
GCTTCACTGC GTTTAACTCC GAACATGAGC ACATGGCGCC CATGTGACCA AGTTGAATCT 
GCGGTTGCTT GGAAACTCGC GATTGAACGT CGTGATGGTC CTACGGCTCT GATCTTCTCT 
CGTCAAAACC TTGCACAACA AGATCGTGAT GCAGAGCAAG TCGCTAATAT AGCAAAGGGT 
GGTTACATCC TGAAAGATTG TGAAGGTCAA CCTGAGCTTA TCTTTATCGC TACTGGTTCA 
GAAGTTGAAC TTGCAGTTGA AGCTGCGGCT CAACTTACAG CGGAAGGGAA AGCGGTACGT 
GTTGTATCAA TGCCAGCAAC AGATGCATTT GATAAGCAAG ATGAAGCCTA CCGTGAATCA 
GTACTTCCAT CAGCAGTAAC AAAACGTGTT GCTATTGAAG CGGGTATTGC TGACTTCTGG 
TATAAGTATG TTGGTTTCGG TGGCAAGATC ATCGGTATGA CAACGTTTGG TGAATCAGCG 
CCTGCTGACG AGCTATTCAA AATGTTTGGT TTCACTACTG AAAATGCAGT GAAAACAGCA 
AAAGAGCTTT TAGCTTAA 

 

Protein sequence

MSSRKHLANA IRALSMDGVQ QANSGHPGAP MGMADIAEVL WRSHLNHNPQ NPEWADRDRF 
ILSNGHGSML IYSLLHLSGY NLSIEDLKNF RQLHSKTPGH PEYGYAPGIE TTTGPLGQGI 
TNGVGMAMAE KALAAQFNRE GHDIVDHNTY VFMGDGCLME GISHEACSLA GTLGLGKLVA 
FWDDNGISID GEVEGWFSDD TPKRFEAYGW HVIPAVDGHD ADAINAAIEA AKAETGRPTL 
ICTKTIIGFG SPNKEGTHDC HGAPLGADEI VATKAKLGWE FGPFDIPTDV YAEWNAKEAG 
KAKEASWNAK FDAYAAAHPE LAAEYKRRVN GGLPAEWEEK TSAIIADLQA NPANIASRKA 
SQNALEAFGA MLPEFMGGSA DLAPSNLTMW SGSKSLTADD FSGNYIHYGV REFAMTAIMN 
GIALHGGFVP YGATFLMFME YARNAMRMAA LMKIQNIQVY THDSIGLGED GPTHQPVEQI 
ASLRLTPNMS TWRPCDQVES AVAWKLAIER RDGPTALIFS RQNLAQQDRD AEQVANIAKG 
GYILKDCEGQ PELIFIATGS EVELAVEAAA QLTAEGKAVR VVSMPATDAF DKQDEAYRES 
VLPSAVTKRV AIEAGIADFW YKYVGFGGKI IGMTTFGESA PADELFKMFG FTTENAVKTA 
KELLA