| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I0545 |
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| Symbol | pilU |
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| ID | 6988985 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | + |
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| Start bp | 598773 |
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| End bp | 599879 |
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| Gene Length | 1107 bp |
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| Protein Length | 368 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 643378931 |
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| Product | twitching motility protein PilU, type II/IV secretion system protein |
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| Protein accession | YP_002262066 |
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| Protein GI | 209694138 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5008] Tfp pilus assembly protein, ATPase PilU |
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| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATTTGG ATGATTTATT GAATCAGATG GTGAAGCAGA AAGCCTCTGA TATTTATATT
ACGGTGGATG CACCGTGTTT ATTACGTGTT GATGGCGTTT TACAAGCGAC AGGGGCAAAG
CAAACGGTAG AGTCTGTAAC CGCCCTGTTG GCTGAGATGA TGAATGATGA TCGAGAAAAA
GAATTTACTC AAACATTAGA AGCCAATTTT GCCATCGTAA AAGAGAGTGG TCGTTTTCGT
GTGAGTGCAT TTTGGCAGCG TGAACAACCG GGGGCCGTGA TCCGTAGAAT TGAAACTAAA
ATCCCATCCA TGGATTCATT GTATTTACCG AGTATCATGA AAGACTTGGC GGTAGCTAAA
CGAGGATTGG TTCTAGTTGT GGGAGCGACG GGATCAGGAA AATCGACCAC AATGGCTGCG
ATGACTGGGT ACCGGAATGA TCATAAATCG GGTCATATTT TGACGGTGGA AGATCCGATT
GAATTTGTTC ATCCACATAA TAAATGCATC GTGACTCAAC GTGAAGTTGG GCTAGATACA
GACAGTTATG AAGTTGCTTT AAAAAATTCA TTACGCCAAG CGCCCGATAT GATTTTGATT
GGTGAAATTC GAACCAGAGA AACGATGAAG TACGCGATGA TGTTTGCTGA GACTGGGCAT
TTGTGTATGG CAACGTTACA CGCAAACAAT GCAAACCAAG CATTAGAGCG TATTTTACAT
TTGGTTCCAA AAGAGAATAA AGAGCAATTT TTATTTGATC TCTCAATGAA TTTAAAAGGT
GTTATTGCTC AACAATTGGT TCCTGATGCT CAGGGAAATG GGCGTCACGG TGTGTTTGAA
GTCTTACTCA ATACTCCCCG AATCGCCGAT TTAATTCGTA GAGGTGATCT GCATGAATTA
AAAGGGACAA TGACACGCTC TCGTGAATCA GGAATGCAGA CGTTTGATCA ATGCTTATTT
GATTTAGTAA TTGATGGCAA GATTACAGAA ACAGAAGCGC TGCATAGTGC GGATTCTGCA
AATGACTTAA GGCTGATGCT GAAGACTAAG CGTGGGGATT CATTTACCAC ATCAAAATTT
GATAATGTGT CGATATCGTT AGATTAA
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| Protein sequence | MNLDDLLNQM VKQKASDIYI TVDAPCLLRV DGVLQATGAK QTVESVTALL AEMMNDDREK
EFTQTLEANF AIVKESGRFR VSAFWQREQP GAVIRRIETK IPSMDSLYLP SIMKDLAVAK
RGLVLVVGAT GSGKSTTMAA MTGYRNDHKS GHILTVEDPI EFVHPHNKCI VTQREVGLDT
DSYEVALKNS LRQAPDMILI GEIRTRETMK YAMMFAETGH LCMATLHANN ANQALERILH
LVPKENKEQF LFDLSMNLKG VIAQQLVPDA QGNGRHGVFE VLLNTPRIAD LIRRGDLHEL
KGTMTRSRES GMQTFDQCLF DLVIDGKITE TEALHSADSA NDLRLMLKTK RGDSFTTSKF
DNVSISLD
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