| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I0537 |
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| Symbol | yggW |
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| ID | 6988604 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | - |
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| Start bp | 592953 |
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| End bp | 594113 |
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| Gene Length | 1161 bp |
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| Protein Length | 386 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 643378923 |
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| Product | coproporphyrinogen III oxidase |
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| Protein accession | YP_002262058 |
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| Protein GI | 209694130 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0635] Coproporphyrinogen III oxidase and related Fe-S oxidoreductases |
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| TIGRFAM ID | [TIGR00539] putative oxygen-independent coproporphyrinogen III oxidase |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0906426 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCTAGTCC CACCACCACT CAGTTTATAC ATTCATATTC CTTGGTGTAT TCAAAAGTGC
CCATATTGTG ATTTCAACTC TCACGCGTTA AAAACAACAA TTCCTGAAGC ACAGTACATT
TCAGCGTTAA TTGACGATCT TGATACCGAT CTTGCTCGTT ATAATATGCA AAATGAACCG
CGTAAACTGC ATTCTATTTT TATTGGTGGT GGTACCCCGA GTTTAATTAC CGCTCCAGAA
ATTAAGCGTT TACTGATCGA AGTTGAAAAA CGCCTACCGT TTGCTGATGA CATTGAAATC
ACCATGGAAG CGAACCCAGG AACGGTAGAA GCCGGACGAT TCATTGAGTA CCGCGAAGCC
GGCGTTAATC GTATTTCTAT TGGTGTGCAA AGCTTTCAAC AAGAGAAGTT AGAAAAACTC
GGACGAATTC ACGGTAAGGA TGAAGCCCTT CGCGCCGCTC GTCTTGCCCA TGAAGCAGGG
TTAAACAGTT TCAATCTCGA CCTAATGCAC GGTTTACCAA ACCAAAGTAT TGATGATGCT
TTGTCTGATT TAAAACAGGC CATTGAACTT AATCCGCCGC ATTTATCTTG GTATCAACTC
ACTATCGAAC CAAATACGGT GTTTTACTAC AAGCCCCCTA CTCTGCCTGA TGATGATGAT
CTATGGGATA TTTTTGAACA AGGTCATCAA ATCCTTGCCG ATGCAGGTTA CGTTCAATAT
GAGATTTCGG GCTACAGTAA AGTCGGTTAT CAATGTCGCC ATAACTTAAA TTATTGGCGC
TTTGGCGACT ATCTAGGGAT TGGTTGTGGT GCTCATGGCA AGCTGAGTTT TGCTGATGGC
CGCATTATTC GAACCACAAA GATCAAACAC CCTAGAGGCT TCTTAGACTT AATGAAACCT
TACTTGATTG ATGAACAAGA AGTGGCAGAT CACGACAGAT CTTTTGAATT CTTTATGAAC
CGTTTCCGCT TACTGGAAGC TTGTCCTAAA CAAGATTTTA TTGATAAAAC CGGGTTAGGT
TTAGAGTCGA TTCAAGAAAC AATGGATTGG GCGAAAGAGA AGAAGTATTT AGAAGAAACA
GAAACGCATT GGCAGATCAC AGAGCATGGA AAATTGTTCT TGAATGATTT GTTGGAAGCG
TTTGTGAGTG ATGAGGAGTA A
|
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| Protein sequence | MLVPPPLSLY IHIPWCIQKC PYCDFNSHAL KTTIPEAQYI SALIDDLDTD LARYNMQNEP
RKLHSIFIGG GTPSLITAPE IKRLLIEVEK RLPFADDIEI TMEANPGTVE AGRFIEYREA
GVNRISIGVQ SFQQEKLEKL GRIHGKDEAL RAARLAHEAG LNSFNLDLMH GLPNQSIDDA
LSDLKQAIEL NPPHLSWYQL TIEPNTVFYY KPPTLPDDDD LWDIFEQGHQ ILADAGYVQY
EISGYSKVGY QCRHNLNYWR FGDYLGIGCG AHGKLSFADG RIIRTTKIKH PRGFLDLMKP
YLIDEQEVAD HDRSFEFFMN RFRLLEACPK QDFIDKTGLG LESIQETMDW AKEKKYLEET
ETHWQITEHG KLFLNDLLEA FVSDEE
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