Gene VSAL_I0502 details

Gene Information

• Locus tag: VSAL_I0502
• Symbol: kdsC
• ID: 6986526
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011312
• Strand: -
• Start bp: 560809
• End bp: 561366
• Gene Length: 558 bp
• Protein Length: 185 aa
• Translation table: 11
• GC content: 41%
• IMG OID: 643378882
• Product: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
• Protein accession: YP_002262025
• Protein GI: 209694097
• COG category: [R] General function prediction only
• COG ID: [COG1778] Low specificity phosphatase (HAD superfamily)
• TIGRFAM ID: [TIGR01662] HAD-superfamily hydrolase, subfamily IIIA; [TIGR01670] 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.252294
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCAACCA TGATCGAAAC CCTTTATGGT GAAGTGGAAG AATCAATCCT CTCTATCGCT 
AAAACAATAA AACTGCTCAT TTGTGATGTT GATGGTGTCT TTTCTGACGG CCTTGTTTAT 
ATGGGCAATG ACGGTGAAGA ATTAAAAACC TTTCATACTC GCGATGGGTA TGGTGTTAAA 
TCATTAATGT CTGCGGGTGT TGAAGTTGCA ATTATTACAG GACGCAACTC TCAAATTGTA 
GAAAATAGAA TGAGAGCACT TGGTATTTCA CTTATCTACC AAGGCCAAGA CAATAAATTA 
CAAGCATATG AAGATATTTT AACTAAACTC AACATAGCAC CTGAACATAC GGGTTACATC 
GGTGATGATC TGATCGATTG GCCTGTAATG GAAAAGGTGG CACTTAAAGT CTGCGTTGCC 
GATGGTCATC CCCTACTGGT TAAACGTGCA AACTATGTGA CCACCATTAA AGGCGGTCAC 
GGTGCGGTTC GTGAAGTAAG CGACCTTATC TTGGAAGCAA AAGGGGAATT AGAGCAACAT 
AAAGGCTTAA GTATATGA 

 

Protein sequence

MPTMIETLYG EVEESILSIA KTIKLLICDV DGVFSDGLVY MGNDGEELKT FHTRDGYGVK 
SLMSAGVEVA IITGRNSQIV ENRMRALGIS LIYQGQDNKL QAYEDILTKL NIAPEHTGYI 
GDDLIDWPVM EKVALKVCVA DGHPLLVKRA NYVTTIKGGH GAVREVSDLI LEAKGELEQH 
KGLSI