Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I0498 |
Symbol | rpoN |
ID | 6986523 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | - |
Start bp | 557544 |
End bp | 559013 |
Gene Length | 1470 bp |
Protein Length | 489 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 643378878 |
Product | RNA polymerase factor sigma-54 |
Protein accession | YP_002262021 |
Protein GI | 209694093 |
COG category | [K] Transcription |
COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAGCAT CTCTTCAGCT AAAAATGGGC CAACAGCTTG CAATGACTCC TCAGTTGCAG CAAGCCATTC GATTATTGCA ATTATCGACA CTTGACCTGC AGCAAGAGAT TCAAGAAGCT CTCGACTCTA ACCCTCTTCT TGATGTCGAA GAAGAGCAAT TAAGCACGCC TGAAAGTTTA CTGTCTCCTG AACCTACACC AGAAAAAGAA ACCGCCACAG CAGAACAAGA ACCCTCTGTC ACTGACAGCA GTGATGTCAT TGATAGCAAT AATATTTCTG AAGAATTAGA GATGGATGCT AGTTGGGATG ATGTTTACAG TGCAAACAGT GGCAGTACTG GATTAGCGAT TGATGATGAC ACCCCATTAT ACCAAGGTGA AACCACCGAA AGTTTGCAAG ATTATTTAAT GTGGCAAGCA GAACTAACTC CATTTACGGA AGTCGATCGC GCTATCGCCA CCACCATTAT TGAGTCATTA GATGAATATG GTTATCTAAC CATTAGTTTA GATGACGTAC TCGAAAGCAT TGGAAATGAA GAAGTCGAGC TCGATGAAGT TGAAGCCGTT CTCAAACGTA TTCAACATTT TGACCCTCTC GGCGTCGCTT CTCGAGATCT CGCTGAATGT TTAATGATCC AATTAGCGAC CTATCCAGTA GATACCCCTT GGCTACCAGA AACTCAATTA ATCTTAACAA AGCATATTAA TTTATTAGGT AATCGTGACT ACCGACAGTT AGCAAAAGAG ACTAAGCTAA AAGAGTACGA TTTAAAACAA GTGATGATGC TTATCCATCA ATTGGACCCT CGCCCAGGCA ACCGAGTCAT CGATACTGAT ACTGAGTATG TTATTCCTGA TGTTTCTGTC TTTAAGCATA ATGGAAAATG GGTCGTCACT ATAAACCCAG ACAGTGTCCC TCGCTTAAAA GTAAATGCAG AATATGCGGC ATTAGGAAAA GGCTTAGGCA ACAGTCCTGA TGGACAATTT ATTCGTACGA ATTTGCAAGA AGCAAAATGG TTAATTAAAA GCTTAGAGAG CAGAAACGAG ACTCTGCTCA AAGTTGCACG CTGTATAGTT GAACATCAAC AAGATTTCTT CGAGTATGGT GAAGAAGCGA TGAAACCAAT GGTATTGAAT GACATCGCTT TAGACGTTGA AATGCACGAA TCCACCATAT CGCGCGTAAC AACACAAAAA TTCATGCATA CCCCTCGTGG TATTTTTGAA TTGAAATATT TCTTCTCTAG TCATGTTAGT ACGGACAGCG GCGGTGAATG CTCATCGACG GCAATCCGGG CACTAGTGAA AAAATTAGTG GCAGCAGAGA ATCAAGCCAA GCCACTAAGT GACAGTAAAA TTGCGACCTT ACTGGCTGAA CAAGGCATAC AAGTGGCACG ACGAACCATT GCTAAATATC GTGAATCACT GGGTATTGCC CCATCAAATC AGCGTAAGCG TTTACTTTAA
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Protein sequence | MKASLQLKMG QQLAMTPQLQ QAIRLLQLST LDLQQEIQEA LDSNPLLDVE EEQLSTPESL LSPEPTPEKE TATAEQEPSV TDSSDVIDSN NISEELEMDA SWDDVYSANS GSTGLAIDDD TPLYQGETTE SLQDYLMWQA ELTPFTEVDR AIATTIIESL DEYGYLTISL DDVLESIGNE EVELDEVEAV LKRIQHFDPL GVASRDLAEC LMIQLATYPV DTPWLPETQL ILTKHINLLG NRDYRQLAKE TKLKEYDLKQ VMMLIHQLDP RPGNRVIDTD TEYVIPDVSV FKHNGKWVVT INPDSVPRLK VNAEYAALGK GLGNSPDGQF IRTNLQEAKW LIKSLESRNE TLLKVARCIV EHQQDFFEYG EEAMKPMVLN DIALDVEMHE STISRVTTQK FMHTPRGIFE LKYFFSSHVS TDSGGECSST AIRALVKKLV AAENQAKPLS DSKIATLLAE QGIQVARRTI AKYRESLGIA PSNQRKRLL
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