Gene VSAL_I0498 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVSAL_I0498 
SymbolrpoN 
ID6986523 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAliivibrio salmonicida LFI1238 
KingdomBacteria 
Replicon accessionNC_011312 
Strand
Start bp557544 
End bp559013 
Gene Length1470 bp 
Protein Length489 aa 
Translation table11 
GC content42% 
IMG OID643378878 
ProductRNA polymerase factor sigma-54 
Protein accessionYP_002262021 
Protein GI209694093 
COG category[K] Transcription 
COG ID[COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog 
TIGRFAM ID[TIGR02395] RNA polymerase sigma-54 factor 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAGCAT CTCTTCAGCT AAAAATGGGC CAACAGCTTG CAATGACTCC TCAGTTGCAG 
CAAGCCATTC GATTATTGCA ATTATCGACA CTTGACCTGC AGCAAGAGAT TCAAGAAGCT
CTCGACTCTA ACCCTCTTCT TGATGTCGAA GAAGAGCAAT TAAGCACGCC TGAAAGTTTA
CTGTCTCCTG AACCTACACC AGAAAAAGAA ACCGCCACAG CAGAACAAGA ACCCTCTGTC
ACTGACAGCA GTGATGTCAT TGATAGCAAT AATATTTCTG AAGAATTAGA GATGGATGCT
AGTTGGGATG ATGTTTACAG TGCAAACAGT GGCAGTACTG GATTAGCGAT TGATGATGAC
ACCCCATTAT ACCAAGGTGA AACCACCGAA AGTTTGCAAG ATTATTTAAT GTGGCAAGCA
GAACTAACTC CATTTACGGA AGTCGATCGC GCTATCGCCA CCACCATTAT TGAGTCATTA
GATGAATATG GTTATCTAAC CATTAGTTTA GATGACGTAC TCGAAAGCAT TGGAAATGAA
GAAGTCGAGC TCGATGAAGT TGAAGCCGTT CTCAAACGTA TTCAACATTT TGACCCTCTC
GGCGTCGCTT CTCGAGATCT CGCTGAATGT TTAATGATCC AATTAGCGAC CTATCCAGTA
GATACCCCTT GGCTACCAGA AACTCAATTA ATCTTAACAA AGCATATTAA TTTATTAGGT
AATCGTGACT ACCGACAGTT AGCAAAAGAG ACTAAGCTAA AAGAGTACGA TTTAAAACAA
GTGATGATGC TTATCCATCA ATTGGACCCT CGCCCAGGCA ACCGAGTCAT CGATACTGAT
ACTGAGTATG TTATTCCTGA TGTTTCTGTC TTTAAGCATA ATGGAAAATG GGTCGTCACT
ATAAACCCAG ACAGTGTCCC TCGCTTAAAA GTAAATGCAG AATATGCGGC ATTAGGAAAA
GGCTTAGGCA ACAGTCCTGA TGGACAATTT ATTCGTACGA ATTTGCAAGA AGCAAAATGG
TTAATTAAAA GCTTAGAGAG CAGAAACGAG ACTCTGCTCA AAGTTGCACG CTGTATAGTT
GAACATCAAC AAGATTTCTT CGAGTATGGT GAAGAAGCGA TGAAACCAAT GGTATTGAAT
GACATCGCTT TAGACGTTGA AATGCACGAA TCCACCATAT CGCGCGTAAC AACACAAAAA
TTCATGCATA CCCCTCGTGG TATTTTTGAA TTGAAATATT TCTTCTCTAG TCATGTTAGT
ACGGACAGCG GCGGTGAATG CTCATCGACG GCAATCCGGG CACTAGTGAA AAAATTAGTG
GCAGCAGAGA ATCAAGCCAA GCCACTAAGT GACAGTAAAA TTGCGACCTT ACTGGCTGAA
CAAGGCATAC AAGTGGCACG ACGAACCATT GCTAAATATC GTGAATCACT GGGTATTGCC
CCATCAAATC AGCGTAAGCG TTTACTTTAA
 
Protein sequence
MKASLQLKMG QQLAMTPQLQ QAIRLLQLST LDLQQEIQEA LDSNPLLDVE EEQLSTPESL 
LSPEPTPEKE TATAEQEPSV TDSSDVIDSN NISEELEMDA SWDDVYSANS GSTGLAIDDD
TPLYQGETTE SLQDYLMWQA ELTPFTEVDR AIATTIIESL DEYGYLTISL DDVLESIGNE
EVELDEVEAV LKRIQHFDPL GVASRDLAEC LMIQLATYPV DTPWLPETQL ILTKHINLLG
NRDYRQLAKE TKLKEYDLKQ VMMLIHQLDP RPGNRVIDTD TEYVIPDVSV FKHNGKWVVT
INPDSVPRLK VNAEYAALGK GLGNSPDGQF IRTNLQEAKW LIKSLESRNE TLLKVARCIV
EHQQDFFEYG EEAMKPMVLN DIALDVEMHE STISRVTTQK FMHTPRGIFE LKYFFSSHVS
TDSGGECSST AIRALVKKLV AAENQAKPLS DSKIATLLAE QGIQVARRTI AKYRESLGIA
PSNQRKRLL