Gene VSAL_I0496 details

Gene Information

• Locus tag: VSAL_I0496
• Symbol: ptsN
• ID: 6986522
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011312
• Strand: -
• Start bp: 556789
• End bp: 557235
• Gene Length: 447 bp
• Protein Length: 148 aa
• Translation table: 11
• GC content: 40%
• IMG OID: 643378876
• Product: nitrogen regulatory IIA protein, PTS system
• Protein accession: YP_002262019
• Protein GI: 209694091
• COG category: [G] Carbohydrate transport and metabolism; [T] Signal transduction mechanisms
• COG ID: [COG1762] Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type)
• TIGRFAM ID: [TIGR01419] PTS IIA-like nitrogen-regulatory protein PtsN

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.337955
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCAGCTAA GCACCATTCT TTCATTGGAT TGCACCAAAA GTGCAGTCCA GTGTACTAGC 
AAGAAACGCG CACTAGAATT GATCAGTGAA ATTGCAGCAC CTCAACTGGG TCAAAATCCA 
CAAGCGCTTT TTGAAAGCTT ATTAAATCGT GAAAAAATGG GAAGTACAGG CATCGGCAAT 
GGCATTGCTA TCCCCCACGG TCGACTTCAT AATTGTGATA CTGCGGTAGC GGTATTAATC 
CAATGCCAAG AACCTATAGA GTTTGATTCT ATTGATAATC GTCCTGTTGA TGTTCTTTTT 
GCTTTACTTG TTCCTGATGA ACAATGCAAA TTACACCTCA AAACACTGTC TAGTGTGGCT 
GAAAAACTCA ATGACAAACA GATCTTACGT CAGCTTCGTC ATGCTGAAAG CGATCAAGAG 
TTGTATCAAA TTTTCACATC TGAATAG 

 

Protein sequence

MQLSTILSLD CTKSAVQCTS KKRALELISE IAAPQLGQNP QALFESLLNR EKMGSTGIGN 
GIAIPHGRLH NCDTAVAVLI QCQEPIEFDS IDNRPVDVLF ALLVPDEQCK LHLKTLSSVA 
EKLNDKQILR QLRHAESDQE LYQIFTSE