| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I0487 |
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| Symbol | cafA |
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| ID | 6986517 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | + |
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| Start bp | 544023 |
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| End bp | 545492 |
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| Gene Length | 1470 bp |
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| Protein Length | 489 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 643378867 |
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| Product | ribonuclease G |
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| Protein accession | YP_002262010 |
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| Protein GI | 209694082 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1530] Ribonucleases G and E |
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| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0311265 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTACAG AGTTGTTAAT AAACGTAACT CCGAGTGAAA CTCGAGTTGC GATGATTGAA
GCCGGTGTGC TTCAAGAGAT ACATGTAGAA AGAGAAGCAA GACGCGGTAT TGTGGGTAAT
ATATACAAAG GCAGAGTAAG CCGAGTATTA CCGGGGATGC AAGCGGCGTT TATTGATATT
GGCTTGGATA AAGCGGCATT TTTGCATGCT TCAGACATTG TGCCTCATAC TGAATGCGTT
TCTGAGAATG AAAAGCGTCA GTTTCAGGTG CGAGATATTT CTCAGTTAGT ACATCAAGGT
CAAGATTTAG TGGTTCAAGT GGTAAAAGAT CCACTTGGAA CAAAAGGTGC TCGTCTAACT
ACGGATATTA CTCTTCCTTC GCGTTACTTG GTCTTTATGC CAGGAGCGAG TCATGTTGGT
GTCTCTCAAC GAATTGAAAG TGAAAAAGAA CGTAATCGTT TAAAGAATAC GGTTTCTGAT
TATTGCGATG AGTTTGGCGG TTTTATTATT CGTACTGCGG CAGAAGGCGC GAAAGAAGCG
GAGATCTCCC AAGATGCTGC TTTTTTAAAA CGTTTGTGGC ATAAGGTAAT TGAGCGTCGT
AAAAAGAGCA AAACAAAATC AATGCTTTAT GGTGAGCTTG GATTAGATCA ACGTATCTTA
CGTGATTTTG TCGGTACAGA GTTAGATTTA ATTCGTGTCG ATTCAAAGCA AGCCTTTGAA
AAATTAAAAG AATTTACAAC TGAATTCGTT CCTGAATTAA CGAAAAAATT GGAATATTAC
TCTGGTGATA AACCGATTTT TGATATGTAT GAAACAGAGA ACGAAATTCA ACGCGCTTTA
GATCGTAAGG TCGAGTTGAA ATCTGGCGGC TATTTGATCA TAGATCAAAC AGAAGCGATG
ACAACGGTTG ATATAAATAC GGGGGCCTTT GTTGGGCGTC GTAATTTAGA AGAAACGATT
TTCAACACGA ATATTGAAGC AACTCAAGCC ATTGCTCGAC AGCTTCGTTT ACGTAATCTT
GGTGGGATCA TTATCATTGA TTTTATCGAT ATGATGAGTG AAGAACATCG TCGCCGAGTG
CTGCAAGTAT TAGGCGCTGC GTTAGATAAA GACCGAGTTA AAACGAACAT TAATGGTTTT
ACCCAATTGG GTTTAGTTGA GATGACTCGT AAACGTACGC GTGAAAGTAT TGAGCATGTT
TTATGTGGTC AATGTCCTAC GTGTGAAGGC CGCGGTGCAG TTAAAACGGT TGAGAGCGTT
TGTTACGAGA TTTTACGTGA AATTACTCGA GTAAATAGAG CGTACGATTC TGATAAATTT
GTCGTATATG CTGCTGTTGC TGTTGCTGAT GCACTTCAAG GTGAAGAATC TCATGCATTG
GCAGAGCTTG AATTATTTAT TGGTAAGCAA GTGAAAATCC AAGCTGAACC ACTTTATATT
CAAGAGCAAT TTGATGTTGT TATGATGTAA
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| Protein sequence | MSTELLINVT PSETRVAMIE AGVLQEIHVE REARRGIVGN IYKGRVSRVL PGMQAAFIDI
GLDKAAFLHA SDIVPHTECV SENEKRQFQV RDISQLVHQG QDLVVQVVKD PLGTKGARLT
TDITLPSRYL VFMPGASHVG VSQRIESEKE RNRLKNTVSD YCDEFGGFII RTAAEGAKEA
EISQDAAFLK RLWHKVIERR KKSKTKSMLY GELGLDQRIL RDFVGTELDL IRVDSKQAFE
KLKEFTTEFV PELTKKLEYY SGDKPIFDMY ETENEIQRAL DRKVELKSGG YLIIDQTEAM
TTVDINTGAF VGRRNLEETI FNTNIEATQA IARQLRLRNL GGIIIIDFID MMSEEHRRRV
LQVLGAALDK DRVKTNINGF TQLGLVEMTR KRTRESIEHV LCGQCPTCEG RGAVKTVESV
CYEILREITR VNRAYDSDKF VVYAAVAVAD ALQGEESHAL AELELFIGKQ VKIQAEPLYI
QEQFDVVMM
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