Gene VSAL_I0479 details

Gene Information

• Locus tag: VSAL_I0479
• Symbol: mshD
• ID: 6988839
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011312
• Strand: +
• Start bp: 534825
• End bp: 535418
• Gene Length: 594 bp
• Protein Length: 197 aa
• Translation table: 11
• GC content: 38%
• IMG OID: 643378860
• Product: type IV pilus, prepilin-like protein (MSHD)
• Protein accession: YP_002262003
• Protein GI: 209694075
• TIGRFAM ID: [TIGR02532] prepilin-type N-terminal cleavage/methylation domain

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.949715
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAGGCT ATAAATACAA TCAACAAGGG TTAACGTTGA TTGAATCTGT CGTTGGCATT 
GTGATTCTTG GTTTTGCTCT TTCTATCTTA GTGTCAGGCG TATTTTCTTC ATCAGAGAAA 
TCACATAAGG CCACATATGA AGCTCAAGCG GCGGCATTAG GCCATTCAAT TATGACGGAT 
ATATTAAGTC GTCAGTTTGA TCAACATAGT GATCCTAATG GTGGGCTATA TCGTTGTGGT 
GAAAAAAATG AAAGCAATAC TCTTATTCCA TGCTCAGTGA CGTTAGGTCG TGATGGCGAT 
GAGCAGAATG TCTCTGTAAA TGCCAGTGTC TTTAATGATG TCGATGATTT TATTGGTTGC 
TGGGGAAAGG CTGAGTTATG CAGCTCAAAT GGGTTAATTA ACTATGATTT TGATAAGCTT 
ATAGCGTCGG ATAGTGCTAA CGAATATAAA AATTTCACTG TTGAAATACA GGTTAATTAT 
GCAAATGTAG ATGGTGGCTC TTCTGTCTCG CCACCATATA AAAAAATAGA TATCACCCTT 
TATGCGAGTC AGCATGCCAG ATATACCTTT AGTGCCTATA GAGGTAATTA TTGA 

 

Protein sequence

MKGYKYNQQG LTLIESVVGI VILGFALSIL VSGVFSSSEK SHKATYEAQA AALGHSIMTD 
ILSRQFDQHS DPNGGLYRCG EKNESNTLIP CSVTLGRDGD EQNVSVNASV FNDVDDFIGC 
WGKAELCSSN GLINYDFDKL IASDSANEYK NFTVEIQVNY ANVDGGSSVS PPYKKIDITL 
YASQHARYTF SAYRGNY