Gene VSAL_I0476 details

Gene Information

• Locus tag: VSAL_I0476
• Symbol: mshA
• ID: 6988838
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011312
• Strand: +
• Start bp: 532892
• End bp: 533365
• Gene Length: 474 bp
• Protein Length: 157 aa
• Translation table: 11
• GC content: 40%
• IMG OID: 643378857
• Product: type IV pilus, mannose-sensitive hemagglutinin A
• Protein accession: YP_002262000
• Protein GI: 209694072
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG2165] Type II secretory pathway, pseudopilin PulG
• TIGRFAM ID: [TIGR02532] prepilin-type N-terminal cleavage/methylation domain

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.903201
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAAGAC AAGGTGGTTT CACCCTTATT GAGTTAGTAG TTGTTATCGT TATCCTAGGT 
ATTCTTGCTG TAACGGCGGC ACCTAAATTT TTAAATCTTC AAGGTGATGC TCGTAAGTCA 
TCTTTACAAG GGTTAAAAGG CGCAATGGCA GGGGCTTCAG GTATCGTTTA TGGTAAAGCG 
GCGATTGAAG GTGTTGAACG TGGAGATGCT AGTGGTGATA GTAAACTAGC GGATGGTACT 
ACGTTAAAAT ATGGTTACCC TACAGCTGAT AATAATGGAA TTGAAAGTGT TGTAGTTGGT 
TTAGCTGAAG ATTGGAGTCG TGCTTCTGTT TCTGGTGCAT CTTCACTTCT TGTTGGTTTT 
AAAGTATCTG GAGCAACAGA AACTACTATC AAGGCTACTA AGTGTTTCGT AACTTACAAT 
GAAGCAACTG CGTCTTCTGC TGTTACGACA TTAGTTACTG ATGATGGTTG CTAA 

 

Protein sequence

MKRQGGFTLI ELVVVIVILG ILAVTAAPKF LNLQGDARKS SLQGLKGAMA GASGIVYGKA 
AIEGVERGDA SGDSKLADGT TLKYGYPTAD NNGIESVVVG LAEDWSRASV SGASSLLVGF 
KVSGATETTI KATKCFVTYN EATASSAVTT LVTDDGC