| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I0469 |
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| Symbol | mshD |
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| ID | 6988847 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | + |
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| Start bp | 525107 |
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| End bp | 526747 |
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| Gene Length | 1641 bp |
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| Protein Length | 546 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 643378851 |
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| Product | type IV pilus, mannose-sensitive hemagglutinin D (MSHD) |
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| Protein accession | YP_002261994 |
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| Protein GI | 209694066 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02519] pilus (MSHA type) biogenesis protein MshL |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00341212 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAGCAT GTAAAATCAT CGTTGGGTTA ATGGTCGCTT CTTTAGCAGG TTGTTCAATG
GGCCATCGAG ATCCAACGGA GATCAAACAA ACCTTAGATC AATCTATTAA TGATAATGGC
GGTCAATTAT TGGATGATCT ACCTGCTTCA ATACAAGCCG ATTTAATGCC TGATTTAAAC
TCATCAACGG TGTCAATTGA TGAGCCCGTA AAACGATTTA GAATCAAAGC GAATGGCGTG
AGTGCAAAAG CCTTTTTTAC AAGCTTAGTA AAAGGCACAG AATACAGTGT GATATTGCAT
CCTGATGTCA GCGGTCGAAT TACGATGAAC GTAAATGAAG TGACGTTGGA TGAAGTACTT
CGCTCTGTTG AAGATCTTTA TGGTTATGAA ATCATAAAAT CAGGCAAGGT ATTGCAAGTT
TATCCTGCGA CGATCCGCAC CGAAACGATC CCCGTTGATT ATTTACAATT AACACGTAAG
GGTCGTTCTT TAACGACAAT CACTACAGGG TCGATTACAA ATTCAGACAG TAACTCATCG
AATAGTAATG ATAGTTCTAA TTCGAATAAC TCATCGTCTT CGTCATCTTC CTCCTCTGCT
ACTGGTGGCA CTGAGATAGA AACAACGAGT GAAAGTGATT TTTGGAAAGA ACTAGAAAAA
GCCGTTTCAG TCATGATAGG TAATGGTTCT GGGCGAAGTG TCGTTGTATC ACCTCAAGCA
AGTGTGATCA CTATTACGGC CTCTCCTGAT GAATTGCGTA AAGTGAAACA GTTCTTAGGT
ATTTCACATA AGCGCTTACA GCGTCAAGTA ATCCTAGAAG CTAAATTATT AGAAGTGACA
CTCAGTGATG GTTACCAACA AGGTATTAAT TGGTCTAACT TAACGGCTGC GGTTGGAGGC
ACTGATATTG TTTTTGGACA AGTCCCAGGA ACAACCGCCG GAGTTCTGCC TGGTATGGAT
GCTATTGGAT CATTATTGGG CGGACAAACC AATATTACGG TTTCTGATGG TAATTTTTCA
GCTGTATTAA GTTTTATGGA TACTCAAGGG GATTTGAATG TGCTTTCAAG CCCGAGAGTG
ACGGCTGCCA ACAACCAGAA AGCCGTGATC AAAGTGGGTC GTGATGAATA CTTCGTCACT
GAAGTCTCTA GTGTAACTGG CAATGGTGAT AATTCGAATG CATCACCAGA AGTGACATTA
ACGCCATTTT TCTCTGGTAT TTCATTGGAT GTTACGCCCC AAATTGATGA TAAAGGGAAT
GTGATGCTCC ACGTTCACCC ATCCGTTATC GATGTTGAAA CAGAAACAAA GATCATCGAT
TTAGGTGATG TTGGAGGGGT TCTTGAGCTA CCGCTGGCCA AAAGCTCTAT CCGTGAATCT
GATTCTGTTA TCCGAGCAAA AAGCGGAGAT GTCGTTGTTA TTGGTGGATT GATGAAATCA
CAAACGGTTG ATCAAGTATC AAAAGTTCCG TTCCTTGGTG ATATTCCTGT TCTTGGGCAT
TTATTCCGAA ATGTCAGTCA ATTAACGACT AAAACAGAGT TAGTTATCTT GCTTAAGCCA
ACGGTTGTTG GGGTTGATAC ATGGCAAGAA GAGTTAGAAC GCTCACGTGA TCTTTTGCAA
GAATGGTTTC CTGACGAGTA A
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| Protein sequence | MKACKIIVGL MVASLAGCSM GHRDPTEIKQ TLDQSINDNG GQLLDDLPAS IQADLMPDLN
SSTVSIDEPV KRFRIKANGV SAKAFFTSLV KGTEYSVILH PDVSGRITMN VNEVTLDEVL
RSVEDLYGYE IIKSGKVLQV YPATIRTETI PVDYLQLTRK GRSLTTITTG SITNSDSNSS
NSNDSSNSNN SSSSSSSSSA TGGTEIETTS ESDFWKELEK AVSVMIGNGS GRSVVVSPQA
SVITITASPD ELRKVKQFLG ISHKRLQRQV ILEAKLLEVT LSDGYQQGIN WSNLTAAVGG
TDIVFGQVPG TTAGVLPGMD AIGSLLGGQT NITVSDGNFS AVLSFMDTQG DLNVLSSPRV
TAANNQKAVI KVGRDEYFVT EVSSVTGNGD NSNASPEVTL TPFFSGISLD VTPQIDDKGN
VMLHVHPSVI DVETETKIID LGDVGGVLEL PLAKSSIRES DSVIRAKSGD VVVIGGLMKS
QTVDQVSKVP FLGDIPVLGH LFRNVSQLTT KTELVILLKP TVVGVDTWQE ELERSRDLLQ
EWFPDE
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