Gene VSAL_I0467 details

Gene Information

• Locus tag: VSAL_I0467
• Symbol: mshJ
• ID: 6988845
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011312
• Strand: +
• Start bp: 524113
• End bp: 524751
• Gene Length: 639 bp
• Protein Length: 212 aa
• Translation table: 11
• GC content: 34%
• IMG OID: 643378849
• Product: type IV pilus, mannose-sensitive hemagglutinin D (MSHJ)
• Protein accession: YP_002261992
• Protein GI: 209694064

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.242549
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATAATT GGATTAAAGC AAAAGACGCT TTCTTAGCGT TATCACAAAG AGAAAAAATG 
CTCATTGTTA TTGTGGGTTG GGTTGCGGTT ATTTTTATTT CTTTAACGCT AGTCATAGAA 
CCTCAAATGG CGAAAACGCA AAAAGCGGAA CAACAACTGT CTCGAGTGAC GAATTCTATT 
TCATCATTAA AACAACAAAT TGAATTAGCT CAATTTCGAT TGCAAAAAGA TCCAAACCTT 
GAAATTAATA AAGAATATAA AGAGCTAACG TTACAAAGCC AAGATTTAGC GAATATTTTA 
TCTAAACGGG TTGCTGCTTT AGTTTCGCCA AGTCAAATGG CACAGTTACT TGAAACCGTA 
TTACAAAAAT CATCAAAATT AAGATTGAGT TCGATGAGTA CATTACCGTC TGAGCGATTA 
TTAGATGAGA ACAGTAACGC TGGCTATTAC ATTCACCCGA TTAAGCTTGT GCTTTCGGGG 
AGTTATTTTG ATTTTGAAGA ATACCTTTCA AATTTAGAAT CATTGCCCGT GAAATATTAT 
TGGAGAAACT TTCAATATAA AGTGAAAACA TACCCAAATG CTGAGTTAAG TATTGAGGTA 
TACACCCTCG GTTCAAGTAA AGGGTTCATT GGAGGTTAA 

 

Protein sequence

MNNWIKAKDA FLALSQREKM LIVIVGWVAV IFISLTLVIE PQMAKTQKAE QQLSRVTNSI 
SSLKQQIELA QFRLQKDPNL EINKEYKELT LQSQDLANIL SKRVAALVSP SQMAQLLETV 
LQKSSKLRLS SMSTLPSERL LDENSNAGYY IHPIKLVLSG SYFDFEEYLS NLESLPVKYY 
WRNFQYKVKT YPNAELSIEV YTLGSSKGFI GG