| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I0442 |
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| Symbol | metH |
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| ID | 6986499 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | + |
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| Start bp | 491126 |
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| End bp | 494806 |
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| Gene Length | 3681 bp |
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| Protein Length | 1226 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 643378826 |
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| Product | B12-dependent methionine synthase |
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| Protein accession | YP_002261970 |
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| Protein GI | 209694042 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0646] Methionine synthase I (cobalamin-dependent), methyltransferase domain
[COG1410] Methionine synthase I, cobalamin-binding domain |
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| TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR02082] 5-methyltetrahydrofolate--homocysteine methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGCAGGAA GCATGATAAA AAATCAAATC GAAAAACAGC TTTTAGAACG AATTTTATTG
ATTGATGGTG GTATGGGTAC CATGATTCAA GAATATAAAT TTGAAGAAAA TGATTACCGT
GGAGAAAGAT TCATTGATTG GCATTGTGAT CTAAAAGGAA ATAATGATCT ATTAGTCTTG
TCAAACCCTA GTGTAATTCG TGATATTCAT TTGGCCTATT TAGAAGCAGG GGCCGATATT
CTTGAAACAA ACACTTTTAA TGCAACGACG ATTGCAATGG CTGACTATGA TATGGAAAGC
CTAAGTGCAG AAATTAACTT TGAAGCTGCA AAATTAGCTA GAAAAGCAGC CGATGAATGG
ACTCTCAAAA CACCTCATAA ACCCCGTTAT GTTGCGGGTG TTCTAGGACC AACAAATAGA
ACCTGTACGC TTTCACCTGA TGTTAATGAC CCGGGTTTTC GTAATGTCAC ATTTGATGGA
TTAGTTAAAG CATATTCTGA ATCTACTCGC GCTCTTATTA AAGGTGGATC TGATTTAATT
CTTATCGAAA CTATTTTTGA TACCTTGAAT GCGAAGGCCT GTTCATTTGC CGTTGAATCT
GTTTTTGAAG AAATGGGAAT TACATTACCC GTTATGATCT CGGGAACTAT CACGGACGCC
TCTGGCCGTA CATTATCAGG TCAAACTACA GAAGCTTTCT ATAATGCACT CCGTCATGTA
AAACCAATCT CATTTGGTCT TAATTGTGCT TTAGGCCCTG ACGAGTTGCG TGAATATGTT
GGAGAATTAT CTCGAATTTC TGAATGCAGT GTTTCGGCTC ACCCAAATGC TGGCTTACCT
AATGCGTTTG GTGAATATGA TCTTTCTCCT GAAGAGATGG CAGAGCACGT AGCTGAATGG
GCTCGAAGCG GCTTCTTAAA TTTAATCGGG GGTTGTTGTG GTACAACGCC AGAACATATT
CGTCAAATGG CTGCGGCAGT TGAAGGTGTG AAGCCTCGCG TTTTACCTGA TATTCCTGTT
GCTTGTCGTT TGTCTGGTTT AGAGCCTCTA ACCATTTCTA AAGAGTCTTT GTTTGTAAAT
GTTGGTGAAA GAACTAACGT AACGGGTTCT GCTCGTTTTA AACGTTTGAT TAAAGAAGAG
TTATACGATG AAGCGTTAAG TGTTGCCCGT GAACAAGTTG AAAATGGCGC ACAAATTATC
GATATAAATA TGGATGAAGG AATGTTGGAA TCAGAAGCCT GTATGGTTCG CTTCCTTAAT
CTATGTGCAT CTGAGCCTGA AATATCGAAA GTTCCAGTGA TGGTCGATTC CTCTAAATGG
GAAGTTATCG AGGCTGGCTT AAAGTGTATT CAGGGTAAAG GTATCGTTAA CTCTATTTCA
CTGAAAGAAG GTAAAGAAAA ATTTGTAGAA CAAGCTAAGT TGGTTCGCCG TTACGGTGCG
GCAGTTATTG TGATGGCCTT TGATGAGAAA GGGCAAGCGG ATACTCGTGA ACGAAAGATC
GAGATATGCA CCAACGCTTA TAATATTTTA GTTAATGAAG TTGGTTTCCC ACCTGAAGAT
ATCATTTTTG ATCCAAATAT CTTTGCTATT GCGACTGGTA TTGATGAGCA TAATAATTAT
GCTGTCGATT TCATAGAAGC CGTTGCCGAT ATTAAAAGAA CATTACCTCA TGCGATGATC
TCAGGTGGTG TTTCTAATGT GTCATTCTCA TTCCGTGGAA ATAATTACGT TAGAGAGGCA
ATTCAGGCTG TATTTTTATA CCACTGTTTT AAACATGGTA TGGATATGGG AATAGTAAAT
GCTGGTCAGC TGGAAATTTA CGATAACGTA CCTGAAGAAT TACGAGAGGC GGTTGAAGAT
GTAGTCTTAA ATCGAAGAGA TGATTCCACA GAACGTTTGC TGGATATTGC TACTGCTTAT
TTAGAAAAAG CGGTGGGTAA AGTTGAAGAT AAATCAGCAC TAGAATGGCG TACTTGGACG
GTAGAAAAGC GTTTAGAGCA TTCTTTAGTT AAAGGTATTA CTGACTTTAT TGTCGATGAT
ACAGAAGAAG CTCGTGTTAA TTCTGAACGC CCAATTCATG TGATTGAAGG TCCATTAATG
GATGGGATGA ACGTGGTTGG TGATTTGTTT GGTGAAGGAA AGATGTTCCT TCCACAAGTA
GTAAAATCAG CTCGTGTAAT GAAGCAAGCG GTTGCTCATT TAGAACCCTT TATAAATGCA
ACAAAAGACG TAGGTTCTAC AAATGGGAAA ATCTTATTAG CGACAGTTAA AGGTGACGTT
CATGATATTG GAAAGAATAT CGTAGGTGTC GTACTTCAAT GTAATAATTA TGAAATTATT
GACCTTGGTG TCATGGTGTC ATGTGAAAAA ATTCTTAAAG TAGCTAAAGA AGAAAACGTC
GATATTATTG GTTTATCTGG TTTGATCACC CCTTCTCTTG ATGAGATGGT GCATGTTGCT
AAAGAGATGG AACGACAAGG ATTTACTGTG CCTCTTTTGA TCGGTGGGGC AACGACATCG
AAAGCGCACA CTGCCGTTAA AATAGAACAA AATTACTCAC AGCCGGTTGT TTATGTGAAT
AATGCCTCAC GTGCCGTAGG CGTATGTACA TCACTTCTTT CTAATGAATT AAAACCTGCA
TTTATTGAAA AGTTAGATTT AGATTATGAC CGAGTGCGAG ATCAGCATAA TAGAAAAATA
CCACGTACAA AACCTATTAC ATTAGAAAGG GCACGAGCTA ATAAAGTTGA TATCGATTGG
GTTAGTTATA CTCCACCAAC GCCAATGAAA CCAGGCGTAC ATATTATAGA TGATGTTGAT
ATAGCAACAT TACGTAAATA TATCGATTGG ACACCATTCT TTATGACTTG GTCTTTAATG
GGGAAATACC CTGCGATTTT AGAGCATGAT GAAGTTGGCG AAGAAGCGAA ACGCTTATAT
AAAGACGCTA ATGATCTTTT AGACCGTGTA GACACTGAAG GGTTATTAAA AGCCCGTGGT
ATGTGTGCAT TATTTCCTGC GGCAGGTATT GGTGATGATA TCGAAGTGTA TAGCGATGAA
TCTCGAACAA CAGTCGTAAA AGTACTGCAT AATTTGCGTC AACAAACGGC AAAACCAAAA
GGGTTTAATT ACTGCCTATC TGATTATATA GCACCAAAAG AAAGTGGGAA GAAAGATTGG
ATTGGTGGTT TTGCGGTTAC TGGTGGAATC GGTGAACGTG ATTTAGCGGA TGCATATAAA
GCGAATGGTG ATGATTATAA CGCAATTATG ATCCAAGCTA TTGCTGATCG TTTAGCGGAA
GGTTTTGCTG AATATTTACA TGAAAAAGTA CGTAAAGAAA TTTGGGGTTA TGCTACGGAC
GAAAACCTGG CTAATGATGA GTTGATCCGA GAAAAATATC AAGGTATTAG GCCTGCTCCT
GGATATCCTG CATGTCCTGA ACATACTGAA AAAGGGGCTC TTTGGGAATT AATGAAGATT
GAAGAATCAA TTGGCATGTC ATTAACATCG AGCTATGCAA TGTGGCCTGG CGCTTCAGTA
TCTGGAATGT ATTTTTCTCA TCCTGATTCT CGTTATTTTG CTATTGCACA AATACAGAAA
GATCAAGCTG AAAGTTACGC TGAACGAAAA GGCTGGGATA TGTTAGAAGC AGAGAAATGG
TTAGGACCTA ACTTAAATTA A
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| Protein sequence | MAGSMIKNQI EKQLLERILL IDGGMGTMIQ EYKFEENDYR GERFIDWHCD LKGNNDLLVL
SNPSVIRDIH LAYLEAGADI LETNTFNATT IAMADYDMES LSAEINFEAA KLARKAADEW
TLKTPHKPRY VAGVLGPTNR TCTLSPDVND PGFRNVTFDG LVKAYSESTR ALIKGGSDLI
LIETIFDTLN AKACSFAVES VFEEMGITLP VMISGTITDA SGRTLSGQTT EAFYNALRHV
KPISFGLNCA LGPDELREYV GELSRISECS VSAHPNAGLP NAFGEYDLSP EEMAEHVAEW
ARSGFLNLIG GCCGTTPEHI RQMAAAVEGV KPRVLPDIPV ACRLSGLEPL TISKESLFVN
VGERTNVTGS ARFKRLIKEE LYDEALSVAR EQVENGAQII DINMDEGMLE SEACMVRFLN
LCASEPEISK VPVMVDSSKW EVIEAGLKCI QGKGIVNSIS LKEGKEKFVE QAKLVRRYGA
AVIVMAFDEK GQADTRERKI EICTNAYNIL VNEVGFPPED IIFDPNIFAI ATGIDEHNNY
AVDFIEAVAD IKRTLPHAMI SGGVSNVSFS FRGNNYVREA IQAVFLYHCF KHGMDMGIVN
AGQLEIYDNV PEELREAVED VVLNRRDDST ERLLDIATAY LEKAVGKVED KSALEWRTWT
VEKRLEHSLV KGITDFIVDD TEEARVNSER PIHVIEGPLM DGMNVVGDLF GEGKMFLPQV
VKSARVMKQA VAHLEPFINA TKDVGSTNGK ILLATVKGDV HDIGKNIVGV VLQCNNYEII
DLGVMVSCEK ILKVAKEENV DIIGLSGLIT PSLDEMVHVA KEMERQGFTV PLLIGGATTS
KAHTAVKIEQ NYSQPVVYVN NASRAVGVCT SLLSNELKPA FIEKLDLDYD RVRDQHNRKI
PRTKPITLER ARANKVDIDW VSYTPPTPMK PGVHIIDDVD IATLRKYIDW TPFFMTWSLM
GKYPAILEHD EVGEEAKRLY KDANDLLDRV DTEGLLKARG MCALFPAAGI GDDIEVYSDE
SRTTVVKVLH NLRQQTAKPK GFNYCLSDYI APKESGKKDW IGGFAVTGGI GERDLADAYK
ANGDDYNAIM IQAIADRLAE GFAEYLHEKV RKEIWGYATD ENLANDELIR EKYQGIRPAP
GYPACPEHTE KGALWELMKI EESIGMSLTS SYAMWPGASV SGMYFSHPDS RYFAIAQIQK
DQAESYAERK GWDMLEAEKW LGPNLN
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