Gene VSAL_I0402 details

Gene Information

• Locus tag: VSAL_I0402
• Symbol: cysJ
• ID: 6986468
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011312
• Strand: +
• Start bp: 439340
• End bp: 441181
• Gene Length: 1842 bp
• Protein Length: 613 aa
• Translation table: 11
• GC content: 40%
• IMG OID: 643378778
• Product: sulfite reductase [NADPH] flavoprotein alpha-component
• Protein accession: YP_002261931
• Protein GI: 209694003
• COG category: [P] Inorganic ion transport and metabolism
• COG ID: [COG0369] Sulfite reductase, alpha subunit (flavoprotein)
• TIGRFAM ID: [TIGR01931] sulfite reductase [NADPH] flavoprotein, alpha-component

Plasmid Coverage information

• Num covering plasmid clones: 4
• Plasmid unclonability p-value: 0.118356
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATAGGG ATGTCGTCAT GTTATTAAAG GAACTCTCCG CACTCGCTAG CCCACTTAAT 
GATCAACAAA TAGGTCAATT ACAGCTAGCC GCTTCAGAAT TATCTCCACA ACAACTTGCT 
TGGGTAAGTG GTTATCTTTG GGGGGTAAGC CAAACATCTG GTGCCACACA ACCAGCAAAC 
CAAGCCGCCG TGGCGGTATC AAGTGAGCCT GTTAGTAAAT TATCAATTAT TTATGCCTCA 
CAAACCGGTA ATGCAAAAGG TGTCGCTGAA GCATTAAAAG CAGAAGCGTC AGCGATTGGT 
ATTCGTGTTG AATTATTTGA TGCGAGTGAT TATAAAGGCA AAAACCTCGC TAAAGAAACG 
CACGTTATTA TTGTTGCATC TACTAATGGT GAGGGAGAAG CCCCTGATAA TGGCATTGAG 
CTGCATGAAT TTTTACAATC GAAAAAAGCA CCTAAGCTAG ATAAATTACA CTATGGTGTG 
ATTGGTTTAG GGGATTCAAG CTATGAATTT TTTTGCCAAA CCGGGAAAGA TTTTGATGGC 
TTTCTAGCCA AAAAAGGAGC AACCGCATTT ATTGATCGTA TTGATCTGGA TGTTGATTAT 
GAAGCTTCTG CCGTTGAGTG GCGTAAACAA GCGTTAGAGA AAGTAAAAGA AACCTTATCA 
ACAGATAATG AGTCTAAAAA TGGACAGGTA GTGCAATTAC CTGTTGGTCA AGCGGCGCGC 
TCTGCTTCGC AATATTCAAA ACAAAACCCA TACACCGCGA CATTATTAGC CAGTCAGAAA 
ATTACGGGTC GAGATTCAGG TAAAGATGTT CGCCATATTG AAATTGATCT TGAAGATTCA 
GGATTAACTT ATCAGCCAGG TGATGCATTA GGTGTGTGGT TTGAAAATAG TCTAGAGTTA 
GTCACCGCTG TGTTAAAACA AGTTGGATTA ACTGGAGAAG AACACATTGA AGTCGATGAT 
GAATCAATAT CTCTTCAAAA AGCCTTAATT GAAAAATATG AAATCACATC AGCAAATCCA 
CAGCAAGTCA GCAAGTTTTC AGAGCTATCA GGCAGTAAAA AGTTAGAGAA GTTAGTTCAA 
GACAAAGATA AGTTACGTCA ATACGCTGGC AATACTCAAG TGATTGATCT GTTATCAGAA 
AAGAAAACCA AATTAACGGC AGAGCAACTA GTGGGTTTAC TTCGCCGTCT AACGCCTCGT 
TTATATTCTA TTGCTTCAAG CCAGAGTGAA GTGGATGAAG AAGTTCACCT GACTGTCGGT 
GTGGTTGAAT ATCAACTGGG GGATGAAACT CGATTCGGTG GTGCCTCTAG CTTTTTATCT 
CATCGTCTAG AAGAAGGCGC AGAAGTGAAC GTGTTTATTG AACACAATAA TAATTTCAAA 
CTTCCTCAAG ATGACAACGT GCCAGTCATC ATGATTGGTC CTGGTACGGG TATTGCCCCT 
TTCCGTGCGT TTGTTCAAGA ACGTGACAAT CGTGATGCAG AAGGTAAAAA CTGGTTATTC 
TTTGGTGATA GAACTTTTAC GCAAGATTTC TTATACCAAG TTGAATGGCA AAAATACCTT 
AAGTCAGGTG TTATAAATCA ATTAGATGTG GCGTTCAGTC GTGATCAACA AGAAAAAGTC 
TATGTTCAAC ATCGTATCTT AGAGCATTCA ATTCAAGTGT GGCAGTGGCT GCAAGATGGC 
GCTTATATTT ATGTCTGTGG TGATGCCACT CGCATGGCAA AAGACGTACA TGAAGCATTA 
ATTACGATTG TTGAGCAGCA AGGAAAAAAG AACAGAGAAG AAGCAGAGCA ATTTGTAAAT 
GATCTGCGTA AGGCGAAACG TTACCAAAGG GATGTGTACT AA 

 

Protein sequence

MNRDVVMLLK ELSALASPLN DQQIGQLQLA ASELSPQQLA WVSGYLWGVS QTSGATQPAN 
QAAVAVSSEP VSKLSIIYAS QTGNAKGVAE ALKAEASAIG IRVELFDASD YKGKNLAKET 
HVIIVASTNG EGEAPDNGIE LHEFLQSKKA PKLDKLHYGV IGLGDSSYEF FCQTGKDFDG 
FLAKKGATAF IDRIDLDVDY EASAVEWRKQ ALEKVKETLS TDNESKNGQV VQLPVGQAAR 
SASQYSKQNP YTATLLASQK ITGRDSGKDV RHIEIDLEDS GLTYQPGDAL GVWFENSLEL 
VTAVLKQVGL TGEEHIEVDD ESISLQKALI EKYEITSANP QQVSKFSELS GSKKLEKLVQ 
DKDKLRQYAG NTQVIDLLSE KKTKLTAEQL VGLLRRLTPR LYSIASSQSE VDEEVHLTVG 
VVEYQLGDET RFGGASSFLS HRLEEGAEVN VFIEHNNNFK LPQDDNVPVI MIGPGTGIAP 
FRAFVQERDN RDAEGKNWLF FGDRTFTQDF LYQVEWQKYL KSGVINQLDV AFSRDQQEKV 
YVQHRILEHS IQVWQWLQDG AYIYVCGDAT RMAKDVHEAL ITIVEQQGKK NREEAEQFVN 
DLRKAKRYQR DVY