| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I0348 |
|---|
| Symbol | |
|---|
| ID | 6988825 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | + |
|---|
| Start bp | 379862 |
|---|
| End bp | 380491 |
|---|
| Gene Length | 630 bp |
|---|
| Protein Length | 209 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 643378726 |
|---|
| Product | aromatic acid decarboxylase |
|---|
| Protein accession | YP_002261880 |
|---|
| Protein GI | 209693952 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0163] 3-polyprenyl-4-hydroxybenzoate decarboxylase |
|---|
| TIGRFAM ID | [TIGR00421] polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTATAAAA AACAGAAAAC AATCACCTTA GCAATGACTG GTGCCTCTGG TGCCCCTTAT
GGATTACGTC TATTGGAGTG TTTGTTGGCT GCTGATTATC AAGTTTATTT TCTTATCTCA
TCTGCAGCAA GAGTTGTGAT GGTAACCGAG CATAATTTAA AATTACCAAG TGGTCCTGAT
GCAATGAAAG CGGTCTTAGT TGAACACTTA GGTTGTGATG CCGATAAGTT AATTGTGTGC
GGTAAAGAAG ATTGGTTTTC TCCAGTGGCT TCTGGGTCGG CGGCACCAAA ACAAATGGTG
GTATGCCCAT GCTCTGCAGG GAGCGTCGCT TCTATTGCTC ATGGTATTTC AGATAATTTG
ATTGAACGGG CTGCTGATGT GGTATTAAAA GAGCGCGGTC AGTTAATTAT GGTGGTTAGA
GAAACGCCAT TTTCTACATT GCATTTAGAA AACATGTTGA AGCTATCTCA AATGGGGACA
ACGATAATGC CTGCTGCTCC TGGATTTTAT CATCAACCGA AATCGATTGA AGATTTAATC
GATTTTATGG TCGCTCGTAT ATTGGATCAT CTAGGTGTAG AGCAAGGGCT TGTTCCTCGA
TGGGGTTATG ATCAGCGTCA GAAGAGTTAA
|
|---|
| Protein sequence | MYKKQKTITL AMTGASGAPY GLRLLECLLA ADYQVYFLIS SAARVVMVTE HNLKLPSGPD
AMKAVLVEHL GCDADKLIVC GKEDWFSPVA SGSAAPKQMV VCPCSAGSVA SIAHGISDNL
IERAADVVLK ERGQLIMVVR ETPFSTLHLE NMLKLSQMGT TIMPAAPGFY HQPKSIEDLI
DFMVARILDH LGVEQGLVPR WGYDQRQKS
|
|---|
| |