| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I0344 |
|---|
| Symbol | rpoA |
|---|
| ID | 6989191 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | + |
|---|
| Start bp | 375805 |
|---|
| End bp | 376794 |
|---|
| Gene Length | 990 bp |
|---|
| Protein Length | 329 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 643378722 |
|---|
| Product | DNA-directed RNA polymerase subunit alpha |
|---|
| Protein accession | YP_002261876 |
|---|
| Protein GI | 209693948 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit |
|---|
| TIGRFAM ID | [TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0950356 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGGGTT CTGTAACAGA ATTTCTAAAG CCGCGTCTAG TTGACATTGA ACAAGTTAGC
CTGACTCACG CAAAAGTAAC TCTTGAGCCA TTAGAGCGTG GTTTCGGCCA TACTCTAGGT
AACGCTCTAC GTCGTATTTT ACTATCTTCA ATGCCGGGTT GTGCCGTAAC TGAAGTAGAA
ATCGAAGGCG TATTACATGA GTACAGCACC AAAGAAGGTG TTCAGGAAGA TATCCTTGAA
ATCCTTCTAA ACCTTAAAGG CCTGGCCGTT AAGGTTGAGG GTAAAGATGA AGTTATCATT
ACTCTTAACA AGTCTGGTGC AGGCCCTGTT GTTGCAGGTG ACATCACCCA TGATGGTGAT
GTTGAGATTG CGAACCCAGA GCATGTAATC TGCCACTTAA CTGATGACAA TGCTGAAATC
AGCATGAGAA TCAAGGTAGA GCGTGGTCGC GGCTATGTAC CGTCAACAGC TCGTATCCAT
ACTGAAGAAG ATGAGCGTCC AATCGGTCGT TTGCTTGTCG ATGCAACTTA TAGCCCAGTA
GATAAAATAT CTTATGCGGT TGAAGCGGCA CGTGTAGAGC AACGTACTGA CTTAGACAAA
CTTGTTATCG ATATGGAAAC GAATGGTACG CTTGATCCTG AGGAAGCTAT CCGTCGTGCA
GCTACAATTT TAGCTGAACA ATTGGATGCA TTTGTAGATC TTCGTGATGT ACGAGTTCCT
GAAGAAAAAG AAGAAAAGCC AGAGTTCGAT CCGATCCTAC TGCGTCCTGT AGACGATCTT
GAACTAACGG TTCGCTCTGC TAACTGTTTG AAAGCAGAAG CGATTCACTA CATTGGTGAT
CTGGTGCAGC GCACTGAGGT TGAGTTACTT AAAACTCCAA ACCTTGGTAA GAAATCTTTA
ACTGAAATTA AAGATGTTCT AGCTTCACGT GGTCTTTCTT TAGGCATGCG CCTAGAGAAC
TGGCCACCAG CGTCTATCGC TGAAGATTAA
|
|---|
| Protein sequence | MQGSVTEFLK PRLVDIEQVS LTHAKVTLEP LERGFGHTLG NALRRILLSS MPGCAVTEVE
IEGVLHEYST KEGVQEDILE ILLNLKGLAV KVEGKDEVII TLNKSGAGPV VAGDITHDGD
VEIANPEHVI CHLTDDNAEI SMRIKVERGR GYVPSTARIH TEEDERPIGR LLVDATYSPV
DKISYAVEAA RVEQRTDLDK LVIDMETNGT LDPEEAIRRA ATILAEQLDA FVDLRDVRVP
EEKEEKPEFD PILLRPVDDL ELTVRSANCL KAEAIHYIGD LVQRTEVELL KTPNLGKKSL
TEIKDVLASR GLSLGMRLEN WPPASIAED
|
|---|
| |