Gene VSAL_I0343 details

Gene Information

• Locus tag: VSAL_I0343
• Symbol: rpsD
• ID: 6989198
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011312
• Strand: +
• Start bp: 375161
• End bp: 375781
• Gene Length: 621 bp
• Protein Length: 206 aa
• Translation table: 11
• GC content: 43%
• IMG OID: 643378721
• Product: 30S ribosomal protein S4
• Protein accession: YP_002261875
• Protein GI: 209693947
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0522] Ribosomal protein S4 and related proteins
• TIGRFAM ID: [TIGR01017] ribosomal protein S4, bacterial/organelle type

Plasmid Coverage information

• Num covering plasmid clones: 4
• Plasmid unclonability p-value: 0.0236416
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCAAGAT ATTTGGGTCC TAAGCTGAAG CTTAGCCGTC GCGAAGGCAC TGATTTATTC 
CTTAAATCAG GCGTACGTGC GATCGATACC AAGTGTAAGA TCGATAACGC TCCAGGTGTA 
CACGGCGCTC GTCGCGGTCG TCTATCTGAG TATGGCGTTC AGCTTCGTGA GAAGCAAAAA 
GTTCGTCGTA TGTATGGCGT ACTAGAAAAA CAATTCCGTA ACTACTACAA AGATGCTGCT 
CGTATTAAAG GCAACACAGG TGAAAACCTA CTTCAACTTC TTGAAGGTCG TCTAGATAAC 
GTAGTTTACC GTATGGGTTT TGGTTCTACA CGTGCTGAAT CTCGTCAACT AGTTAGTCAT 
AAGTCTATTC TAGTTAATGG TAAAGTAGTT AACGTTCCTT CTTTCAAAGT TTCGGCTAAC 
GATGTTGTTT CAATTCGTGA AAAAGCTAAA CTGCAATCAC GTATTAAAGC TGCTCTAGAA 
GTTGCTGAAC AACGCGAAAA GCCAACTTGG ATTGAAGTAG ATGCTGGCAA AATGGAAGGT 
ACGTTTAAGC GTCTTCCTGA ACGTTCTGAT TTGTCTGCCG ACATCAACGA ACACTTGATC 
GTCGAGCTTT ACTCTAAGTA A 

 

Protein sequence

MARYLGPKLK LSRREGTDLF LKSGVRAIDT KCKIDNAPGV HGARRGRLSE YGVQLREKQK 
VRRMYGVLEK QFRNYYKDAA RIKGNTGENL LQLLEGRLDN VVYRMGFGST RAESRQLVSH 
KSILVNGKVV NVPSFKVSAN DVVSIREKAK LQSRIKAALE VAEQREKPTW IEVDAGKMEG 
TFKRLPERSD LSADINEHLI VELYSK