| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I0227 |
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| Symbol | polA |
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| ID | 6989219 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | + |
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| Start bp | 272158 |
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| End bp | 274962 |
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| Gene Length | 2805 bp |
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| Protein Length | 934 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 643378610 |
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| Product | DNA polymerase I |
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| Protein accession | YP_002261767 |
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| Protein GI | 209693839 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0258] 5'-3' exonuclease (including N-terminal domain of PolI)
[COG0749] DNA polymerase I - 3'-5' exonuclease and polymerase domains |
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| TIGRFAM ID | [TIGR00593] DNA polymerase I |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.774927 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAAGAA TTCCTGATAA CCCATTCATT TTAGTGGATG GTTCCTCATA TCTTTTCCGC
GCTTACCATG CTGCTCCGAA CTTCACTAAT GGCAATGGTG AGCCAACAGG TGCAGTGTAC
GGTGTTATCA ATATGCTGCG TAGTCTTCTA AAGCAATTCG AAACGAATCG TATTGCGGTT
ATTTTTGATG CGAAAGGCAA AACTTTTCGT AATGACATGT ACCCAGAGTA TAAAGCGAAT
CGTCCACCGA TGCCGGATGA ATTACGTTGC CAAATCGAAC CATTGCATAA ATTGATTAAA
GCGATGGGTT TACCATTGAT TTCTATCTCA GGTGTTGAAG CCGATGACGT GATCGGTACG
CTTGCATCAC AAGCGTCAAA GGCCGGTATC CCAGTACTGA TTAGTACTGG AGATAAAGAC
ATGGCGCAGT TGGTTGATGA GAACGTCACA TTGATCAATA CCATGACGAA TGTGATCATG
GGCCCTGAAG GTGTGGTCGA AAAATTTGGT GTTCCTCCAG AGCTTATTAT TGATTACCTT
GCCTTGATGG GAGATGCCTC AGATAACATT CCTGGTGTTC CTGGCATTGG TGATAAAACA
GCAAGAGCCT TATTACAAGG TGTTGGTGGT TTAGATACGC TTTACGCTAA TCTTGATGAT
ATTGCGCCTC TTGGTTTCCG TGGTTCAAAA GGCATGGCTA AGAAGTTGGA AGAAAATAAA
GAAGGGGCTT ATCTTTCTTA TAAACTTGCA ACGATTAAAT TAGATGTTGA GTTAGAACAA
CAACCAGAAG AACTTGTGAA ACAAGAACCG AATGTTGATG AATTAATCCA AATGTTTGGT
CAAATGAACT TCAAGCGTTG GTTAACTGAA ATGCTAGATG GCAGTGACGG TAAGATCGTT
TCACATGAAA CATCGGCACA CCGAACAACT AGCTCGTCAT CAGATGAAGG TGATAGTGCA
GAAGAAGAAA CGATTGTTGC TGCTCAGGTC GATCGTTCAA AATATGAAAC CATCTTCACG
AAAGAAGCGT TTTCTGCGTG GTTAGAGAAA GTAAATAATG CAGAAGTAAC CGCGTTTGAT
ACTGAAACAG ACAGCTTAGA TTACATGGTA GCGAACCTGA TAGGTCTTTC TTTCTCTGTA
GAAGAAGGAG AAGCCGCTTA TGTGCCCGTT GCTCATGATT ACCTTGATGC ACCTGAACAA
TTAGATCGTG ATTGGGTTCT GGCGCAATTA AAGCCGTATT TAGAAGACGA GACTAAAGCA
AAAGTAGGTC AAAACCTGAA ATACGATGCG AGCGTGCTTG CTCGTTATGA TATCGAAATG
AAAGGCATTA AGTTTGATAC CATGTTGGAA TCTTATGTTT ATAACAGCGT GGCTGGTAAA
CATAATATGG ACAGCCTTGC ACTGCGTTAT CTGCAGCATA ATACGATTTC ATTTGAAGAG
ATCGCAGGTA AAGGTAAGAA ACAACTGACC TTTAACCAAA TTGCGTTAGA AGAAGCGGCA
CCTTATGCGG CTGAAGATGC GGATATCACG CTGCGCTTAC ATAATGTTTT ACATGCGAAA
CTGGTGACTG ATGAAAAACT GAATGCAGTG TTTACCGATA TCGAACTGCC TTTAATTTCA
GTGCTTTCTC GTATGGAAAG AAAAGGCGTA TATATCGATG ATATGCTGCT TTCTGCACAG
TCATTGGAAA TCGGCCAGCG TTTAGATGAA CTAGAAACCG CGTCATTTGA AGTGGCAGGA
CAAGAGTTCA ATATGAACTC ACCAAAACAA CTGCAAACCA TTCTGTTTGA AAAAATGGAA
TTACCAGTGA TCAAAAAAAC ACCATCAGGT GCCGCTTCTA CGAATGAAGA AGTACTGCAA
GAATTGGCGT TAGAGTATGA ATTACCTAAA TTAATTTTAG AATATCGTGG CTTAGCGAAA
CTAAAATCAA CCTACACTGA TAAGCTTCCT AAGATGATTA ACCCATCAAC TGGTCGTGTG
CATACTTCTT ATCATCAAGC AGTAACAGCG ACTGGACGTT TATCATCGAC CGATCCTAAC
TTACAAAACA TTCCAATTCG TAATAAAGAA GGCCGTCGTA TTCGTCAAGC GTTTGTGGCA
CCTCACGGAT GGAAAATCTT AGCGGTCGAT TACTCTCAAA TTGAACTTCG TATTATGGCG
CATTTATCTC AAGATAGAGC CTTATTAGAA GCATTCTCTG CGGGTAAAGA TATTCACGCA
GCGACGGCGG CTGAAGTGAA AGGCGTATCA ATTGAAGAGG TGACGTCAGA AGATCGTCGT
CGTGCTAAAG CCATCAACTT CGGTTTGATT TATGGAATGA GTGCGTTTGG CCTTGCTAAG
CAAATCGGGA TTTCTCGTGG TGAAGCGCAA GATTACATGA ATGTGTATTT CGAACGTTAC
CCAGGCGTGA TGCAATACAT GGAAGAAACA CGCTTATTGG CGACAGAACA GGGGTATGTT
GAAACTCTGT ATGGCCGCCG TTTGTATTTA CCAGAAATTA ATGCACGTAA TGCGATTCGT
CGTAAAGCGG CAGAACGTGC AGCAATTAAT GCTCCAATGC AGGGCACTGC TGCGGATATC
ATTAAGAAAG CAATGATTCT AGTGGATAAC TGGATTGAAG CTGAAGGTAC TGGTCGAGTT
AACTTGTTAA TGCAAGTACA CGATGAATTG GTATTTGAAG TAAAAGAAGA CGAATTAGAA
GCGATCACAA AACAAGTGAC GGCATTAATG GAAGCTGCGG TATCGCTCGA TGTTCCATTG
ATTGCTGAAA GTGGTTTTGG AGATAACTGG GATGAAGCCC ATTAA
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| Protein sequence | MARIPDNPFI LVDGSSYLFR AYHAAPNFTN GNGEPTGAVY GVINMLRSLL KQFETNRIAV
IFDAKGKTFR NDMYPEYKAN RPPMPDELRC QIEPLHKLIK AMGLPLISIS GVEADDVIGT
LASQASKAGI PVLISTGDKD MAQLVDENVT LINTMTNVIM GPEGVVEKFG VPPELIIDYL
ALMGDASDNI PGVPGIGDKT ARALLQGVGG LDTLYANLDD IAPLGFRGSK GMAKKLEENK
EGAYLSYKLA TIKLDVELEQ QPEELVKQEP NVDELIQMFG QMNFKRWLTE MLDGSDGKIV
SHETSAHRTT SSSSDEGDSA EEETIVAAQV DRSKYETIFT KEAFSAWLEK VNNAEVTAFD
TETDSLDYMV ANLIGLSFSV EEGEAAYVPV AHDYLDAPEQ LDRDWVLAQL KPYLEDETKA
KVGQNLKYDA SVLARYDIEM KGIKFDTMLE SYVYNSVAGK HNMDSLALRY LQHNTISFEE
IAGKGKKQLT FNQIALEEAA PYAAEDADIT LRLHNVLHAK LVTDEKLNAV FTDIELPLIS
VLSRMERKGV YIDDMLLSAQ SLEIGQRLDE LETASFEVAG QEFNMNSPKQ LQTILFEKME
LPVIKKTPSG AASTNEEVLQ ELALEYELPK LILEYRGLAK LKSTYTDKLP KMINPSTGRV
HTSYHQAVTA TGRLSSTDPN LQNIPIRNKE GRRIRQAFVA PHGWKILAVD YSQIELRIMA
HLSQDRALLE AFSAGKDIHA ATAAEVKGVS IEEVTSEDRR RAKAINFGLI YGMSAFGLAK
QIGISRGEAQ DYMNVYFERY PGVMQYMEET RLLATEQGYV ETLYGRRLYL PEINARNAIR
RKAAERAAIN APMQGTAADI IKKAMILVDN WIEAEGTGRV NLLMQVHDEL VFEVKEDELE
AITKQVTALM EAAVSLDVPL IAESGFGDNW DEAH
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