| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I0220b |
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| Symbol | hemC |
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| ID | 6988643 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | - |
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| Start bp | 260447 |
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| End bp | 261382 |
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| Gene Length | 936 bp |
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| Protein Length | 311 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 643378602 |
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| Product | porphobilinogen deaminase |
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| Protein accession | YP_002261760 |
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| Protein GI | 209693832 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0181] Porphobilinogen deaminase |
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| TIGRFAM ID | [TIGR00212] porphobilinogen deaminase |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.824174 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCACAAC AATTACCGGT TCGTATTGCC ACTCGTAAAA GTCCTCTGGC TCTATGGCAA
GCTCATTTTG TAAAGGATGC ACTGCAAGCC GCTCACCCTG GTTTGGAAGT CGAACTCGTT
ACAATGGTCA CTAAAGGAGA CATCATTCTT GATACACCTT TAGCTAAAAT TGGCGGTAAA
GGTTTATTCG TTAAGGAGCT TGAAGTTGCG ATGTTAGAAG GTCGTGCCGA TCTTGCCGTT
CACTCTATGA AAGACGTGCC TGTCGAATTT CCTGAAGGAC TAGGACTTGT CACTATTTGC
GAGCGTGGAG ACCCGCGTGA TGCTTTTGTA TCAAATACCT ATAACAACAT TGATGAATTA
CCACAAGGTG CTACAGTTGG TACATGTAGC TTACGTCGTC AATGCCAGTT AAAAGAATAT
CGTCCAGATT TAATCATCAA AGAATTACGC GGTAATGTGG GAACACGTTT ACAAAAACTG
GATGATGGTA ATTACGATGC GATCATTCTT GCGTGTGCCG GACTGATTCG TCTTGGCTTA
GAAGATCGTA TTAAAAGTTC AATTGAACCA GAGCAATCTC TACCGGCTGT TGGTCAAGGT
GCTGTTGGTA TTGAAACCCG CTTGAACGAT GATCGTATTC GAGCACTACT CGCACCACTT
AATCACCCAG AAACGGCTCA CCGTGTATTG TGTGAAAGAG CAATGAATAA TCGTCTTGAA
GGCGGTTGCC AGGTACCGAT TGGCAGCTAT TCATTAATCG ATGGCGATCA AATTTGGTTA
CGCGCTTTAG TTGGTGAACC TGACGGGTCG ATTATGGTTC GCGGTGAAAC TACAGGTCCA
GTCTCTGATG CTGAAGAACT TGGCACAAAA CTGGCTGAAC AACTGCTTAA TGACGGTGCA
AAAGACATTT TAGACCGCCT ATACGCTGAC GCTTAA
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| Protein sequence | MSQQLPVRIA TRKSPLALWQ AHFVKDALQA AHPGLEVELV TMVTKGDIIL DTPLAKIGGK
GLFVKELEVA MLEGRADLAV HSMKDVPVEF PEGLGLVTIC ERGDPRDAFV SNTYNNIDEL
PQGATVGTCS LRRQCQLKEY RPDLIIKELR GNVGTRLQKL DDGNYDAIIL ACAGLIRLGL
EDRIKSSIEP EQSLPAVGQG AVGIETRLND DRIRALLAPL NHPETAHRVL CERAMNNRLE
GGCQVPIGSY SLIDGDQIWL RALVGEPDGS IMVRGETTGP VSDAEELGTK LAEQLLNDGA
KDILDRLYAD A
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