| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I0197 |
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| Symbol | |
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| ID | 6988624 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | + |
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| Start bp | 236541 |
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| End bp | 238877 |
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| Gene Length | 2337 bp |
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| Protein Length | 778 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 643378582 |
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| Product | putative RNA binding protein |
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| Protein accession | YP_002261740 |
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| Protein GI | 209693812 |
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| COG category | [K] Transcription |
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| COG ID | [COG2183] Transcriptional accessory protein |
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| TIGRFAM ID | [TIGR00426] competence protein ComEA helix-hairpin-helix repeat region |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0364185 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATAATAA ATATAATTGC CAAAGAACTT AACGTTCGCC CTCAACAAGT TGCCGCTGCT
GTTCAATTGA TTGACGAAGG CAGCACGATT CCATTTATTG CTCGTTACCG TAAAGAAGTA
ACTGAAGGTT TGGACGATAC TCAACTTCGT ACGCTAGACA CGCGTTTAAC TTACTTACGA
GAGTTGGATG ATCGTCGTAA ATCAATTCTA AAATCAATCA AAGAACAAGA AAAACTGACG
CCTGAACTAG AGCGTGAAAT TTTAGATGCC GACAGCAAAA CTCGTCTTGA AGATTTGTAC
TTACCCTTCA AACGTAAGCG TCGAACTAAA GGTCAAATTG CAATTGAAGC AGGAATTGAA
CCGCTGGCTG ATTTGTTGTG GACACGTCCT GAAAATACCC CTGAAGAGGC GGCTCAATCG
TATATTAATG CCGATAATGG CTTTGCTGAT ACCAAAGCGG TATTAGACGG CGCTCGTGCA
ATCTTGATGG AACGTATGGC TGAAGATGCC AACTTACTAG AGAAAGTACG TAACTACTTA
ACCAGTAACG CTGAACTGTC CTCTAAAATG GTTGATGGCC AAGAGCACAC AGGCGAGAAG
TTTAAAGATT ACTTTGAACA TAATGAAAAG TTAACGCGTG TTCCTTCTCA CCGTGCGCTT
GCGATGCTTC GTGGTCGTAA TGAAGGTTTT TTACAGCTTT CTATTAATGC CGATCCAAAT
CAAGAAGAAG GCGTTCGTGG CTCTTACTGT GAAATCATCA TCGCCAATCA TTATGGCGTT
ACTTTAGGAT CTCAACCTGC GGATTTATGG CGTAAACAAG TGATTAGCTG GACATGGCGC
ATCAAGATTT TAATGCACAT GGAAACCGAG TTAATGGGCG CATTAAAAGA GCGCTCTGAA
GATGAAGCGA TTGATGTATT TGCCACTAAC CTTAAAGACT TATTAATGGC GGCACCTGCG
GGTCTGAAAA CGACACTAGG TTTAGATCCT GGTTTACGTA CCGGCACTAA AGTCGCAGTG
GTTGATGCAA CGGGTAAAGT GTTAGCAACA GATACCATTT ATCAAAACCA ACCTCACAAT
AAAACAGCGC AATCTGCACA GATTATCGAA ACCTTAATCA AACGTCACAA TGTCGATTTG
ATTGCGATTG GTAATGGTAC GGCTTCACGC GAGACCGATG CCTTTGTGGG TGATTTACTG
AAAAAATCAG GCTTGTCTGC AACCAAAATT ATCGTGAGTG AAGCCGGTGC ATCTGTGTAC
TCGGCCTCTG AACTCGCAGC AAAAGAATTC CCCGATTTAG ATGTGTCTAT TCGTGGTGCA
GTATCTATCG CTCGTCGCTT GCAAGATCCA CTGGCAGAGC TGGTTAAAAT TGACCCGAAA
GCGATTGGTG TTGGTCAATA TCAACATGAC GTTAGCCAAA GCCAATTAGC GAAGAAGCTA
GATGCAGTTA TTGAAGACTG TGTAAATGCC GTCGGTGTTG ATGTAAATAC CGCATCGTCT
GCATTATTGA CCCGTGTTGC TGGTTTATCG ACGACGATCG CACAAAATAT TGTTGATTAC
CGTGATGAAA ATGGTCGCTT TGAAAACCGT ATTACATTGA AAAAAGTCGC ACGTTTAGGG
CCAAAAGCGT TTGAACAGTG TGCTGGTTTC TTACGTGTGA TGAATGGTAA AAACCCATTA
GATGCCTCAG CGGTTCACCC TGAAGCGTAT CCTGTAGTGA AAACCATTGC GGAGAAAAAC
GGCAAAGCCA TTGATGCGAT TATTGGTAAT ACTGAATTTT TACGTTCTGT CTCTGCGAAT
GATTACATCA GTGCTGATTT TGGTCTACCT ACCGTCACTG ACATCATTTC TGAGCTTGAT
AAACCGGGTC GAGATCCTCG TCCTGAGTTT AAAACGGCGA CCTTTGCTGA TGGCGTAAAC
ACGGTATCCG ATCTTGAATT AGGCATGATA TTGGAAGGCG TGGTATCTAA CGTGGCGAAC
TTTGGTGCGT TTGTGGATAT CGGTGTTCAC CAAGATGGTT TGGTTCATAT CTCGGCACTA
AGCGATACGT TTGTCTCTGA CCCACGTGAA GTGGTTAAAG CCGGTGATAT CGTGAAAGTG
AAAGTCATGG AAGTGGACGC GCAACGTAAG CGTATCGCCC TGACTATGCG CTTGAATGAT
CAGCCAGGGG AAGATACTCG TCCTCAGCGC CAATCAAATC AACCACAGCA GCGTAATGAG
CGTACTCAAG CGCCAAGACC TTCCTCTTCT GCAAGACAGC AACGTTCGAA TAATGATGTT
GGTAATGCGG CGATGGGTGG TGCGTTTGCT GCGGCGTTTG CGAAGGCTAA GAAGTAA
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| Protein sequence | MIINIIAKEL NVRPQQVAAA VQLIDEGSTI PFIARYRKEV TEGLDDTQLR TLDTRLTYLR
ELDDRRKSIL KSIKEQEKLT PELEREILDA DSKTRLEDLY LPFKRKRRTK GQIAIEAGIE
PLADLLWTRP ENTPEEAAQS YINADNGFAD TKAVLDGARA ILMERMAEDA NLLEKVRNYL
TSNAELSSKM VDGQEHTGEK FKDYFEHNEK LTRVPSHRAL AMLRGRNEGF LQLSINADPN
QEEGVRGSYC EIIIANHYGV TLGSQPADLW RKQVISWTWR IKILMHMETE LMGALKERSE
DEAIDVFATN LKDLLMAAPA GLKTTLGLDP GLRTGTKVAV VDATGKVLAT DTIYQNQPHN
KTAQSAQIIE TLIKRHNVDL IAIGNGTASR ETDAFVGDLL KKSGLSATKI IVSEAGASVY
SASELAAKEF PDLDVSIRGA VSIARRLQDP LAELVKIDPK AIGVGQYQHD VSQSQLAKKL
DAVIEDCVNA VGVDVNTASS ALLTRVAGLS TTIAQNIVDY RDENGRFENR ITLKKVARLG
PKAFEQCAGF LRVMNGKNPL DASAVHPEAY PVVKTIAEKN GKAIDAIIGN TEFLRSVSAN
DYISADFGLP TVTDIISELD KPGRDPRPEF KTATFADGVN TVSDLELGMI LEGVVSNVAN
FGAFVDIGVH QDGLVHISAL SDTFVSDPRE VVKAGDIVKV KVMEVDAQRK RIALTMRLND
QPGEDTRPQR QSNQPQQRNE RTQAPRPSSS ARQQRSNNDV GNAAMGGAFA AAFAKAKK
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