Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VSAL_I0146 |
Symbol | rhlB |
ID | 6988619 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Aliivibrio salmonicida LFI1238 |
Kingdom | Bacteria |
Replicon accession | NC_011312 |
Strand | - |
Start bp | 185316 |
End bp | 186620 |
Gene Length | 1305 bp |
Protein Length | 434 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 643378537 |
Product | ATP-dependent RNA helicase RhlB |
Protein accession | YP_002261695 |
Protein GI | 209693767 |
COG category | [J] Translation, ribosomal structure and biogenesis [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG0513] Superfamily II DNA and RNA helicases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00149472 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAAGA CGCACATCAC AGAGCAAAAA TTTGCCGACC TAGGTTTAGA GCCTCAGGTC CTTGATGGTT TGAATGCAAA AGGGTTCATT AATTGTACCC CAATTCAAGC CAAGGCATTG CCGGTACTGC TCGCCGGCCA AGACATTGCA GGCCAAGCCC AAACGGGCAC TGGTAAGACG CTCGCGTTCC TTGCTGCTAC TTTTAATCAC CTATTAACTA CGCCTGCACC TGAAGGCCGT AAAATCACGC AACCACGAGC TATTATTATG GCTCCAACGC GTGAGTTAGC GATTCAAATC TATAACGATG CTGAATCTCT AATCGCAAGT ACCGGCTTAA AAGCGGCACT TGCTTACGGT GGCGAACGCT ATGAGAAGCA ACAAAAAGTT ATCGAAGCTG GTGTTGATAT CCTAATCGGA ACAACTGGCC GCATTATCGA TTTCTACAAA CAAGGTCAAA TTGACTTTAA AGCAATCCAA GTGGTTGTTT TAGATGAAGC CGATCGCATG TTTGATTTGG GTTTCATTAA AGATATTCGT TTTGTATTCC GTCGTATGCC AGCGCCTGCT GAGCGTCTGA ATATGCTGTT TTCAGCAACA TTATCTTACC GCGTACAAGA ACTTGCGTTT GAACACATGC AAGAACCTGA GCACGTAGTT GTTGAACCGG ATCAAAAAAC GGGTCACCTG ATTACTGAAG AATTATTCTA TCCTTCAAAT GATCACAAAA TGGCACTTCT TCAAACATTG ATCGAAGAAG AATGGCCTGA TCGTGCAATT ATTTTCGCCA ATACTAAACA CAAATGTGAA TTAGTTTGGG GGCATCTAGC TGCCGATAAA CACCGCGTAG GCCTTCTTAC TGGTGATGTT CCACAGAAAA AACGTGAACG CATCCTAGAA GAATTTACGA AAGGTGAAGT CGATATCCTT GTTGCTACCG ACGTAGCGGC TCGTGGTCTA CACATTCCAC AAGTAACACA TGTATTTAAT TTTGATTTAC CAAATGAAGC CGAAGATTAT GTTCACCGTA TTGGTCGTAC TGGTCGTGCT GGTGAAAGCG GTAATTCAAT TAGTTTCGCT TGTGAAGAAT ACGCAATCAA TCTTCCTGCA ATTGAAGAAT ACATTGAGCA TTCAATTCCA CAGTCTGATT ACGATACATC AGCACTATTG GAAGATTTAC CAGCACCAAT CAGACTTCAA CGCCGTCCAC CACAAAATCG TCGTAACGGC AGTAACAATG GTCAACGTCA AAGCGGGAAT CGCAAACATT CACGCCCACG TCCACCTCGT AGCCCTCAAG CTTAA
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Protein sequence | MKKTHITEQK FADLGLEPQV LDGLNAKGFI NCTPIQAKAL PVLLAGQDIA GQAQTGTGKT LAFLAATFNH LLTTPAPEGR KITQPRAIIM APTRELAIQI YNDAESLIAS TGLKAALAYG GERYEKQQKV IEAGVDILIG TTGRIIDFYK QGQIDFKAIQ VVVLDEADRM FDLGFIKDIR FVFRRMPAPA ERLNMLFSAT LSYRVQELAF EHMQEPEHVV VEPDQKTGHL ITEELFYPSN DHKMALLQTL IEEEWPDRAI IFANTKHKCE LVWGHLAADK HRVGLLTGDV PQKKRERILE EFTKGEVDIL VATDVAARGL HIPQVTHVFN FDLPNEAEDY VHRIGRTGRA GESGNSISFA CEEYAINLPA IEEYIEHSIP QSDYDTSALL EDLPAPIRLQ RRPPQNRRNG SNNGQRQSGN RKHSRPRPPR SPQA
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