| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I0126 |
|---|
| Symbol | dapF |
|---|
| ID | 6988769 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aliivibrio salmonicida LFI1238 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011312 |
|---|
| Strand | + |
|---|
| Start bp | 162449 |
|---|
| End bp | 163279 |
|---|
| Gene Length | 831 bp |
|---|
| Protein Length | 276 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 643378519 |
|---|
| Product | diaminopimelate epimerase |
|---|
| Protein accession | YP_002261677 |
|---|
| Protein GI | 209693749 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0253] Diaminopimelate epimerase |
|---|
| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCACTTTC ATTTTTCTAA AATGCACGGG CTAGGCAATG ACTTTATGGT GGTTGATTGC
TTAACTCAAA ATATTTTCTT TTCACCAGAT TTGATCCGTC GTCTGGCTGA CCGTAATCGT
GGTATCGGTT TCGATCAGTT ATTGGTGGTT GAAGCTCCCT ATGATCCTGA AACTGATTTC
CATTACCGAA TTTTTAATTC TGATGGCACA GAAGTAGAGC AATGCGGCAA TGGCGCTCGT
TGTTTTGCTC GTTTTGTCCG AATGAAAGGC TTAACGAATC GAACGACTAT TTTGGTCAGC
ACGAAAAAAG GAAAAATGAG TTTAAAGGTG GAAGATGATG ATCAAATTAC GGTGAACATG
GGTGAACCTC AATTTGAACC AAACAAAATT CCATTTAAAG CGACTCAAGC TGAAAAAACC
TATTTATTGC GTGCGGAAGA TAAAACATTA TTTTGTGGTG CGGTGAGTAT GGGCAATCCA
CACTGCGTGA CGGTGGTGGA TGATGTCGAT AATTACGATG TTGATAAATA CGGCCCATTA
GTGGAAGGGC ATGAACGCTT CCCTGAGAGA GTAAACGCAG GCTTTATGGA GATAGTTTCT
CCGAGCGAAA TTAAATTACG TGTTTATGAA CGTGGTGCGG GTGAAACTCA AGCGTGTGGA
AGCGGTGCTT GTGCAGCGGT TGCTGTAGGT ATAATGCAAG AACTCCTAGA AGAAGACGTT
AAAGTGTCTT TGCCTGGTGG TGATTTACGT ATTGTTTGGC AAGGCCCGGG TAAACCGTTA
TTCATGACAG GGCCTGCGAC ACACGTTTAT GACGGTCAAT TATCAATATG A
|
|---|
| Protein sequence | MHFHFSKMHG LGNDFMVVDC LTQNIFFSPD LIRRLADRNR GIGFDQLLVV EAPYDPETDF
HYRIFNSDGT EVEQCGNGAR CFARFVRMKG LTNRTTILVS TKKGKMSLKV EDDDQITVNM
GEPQFEPNKI PFKATQAEKT YLLRAEDKTL FCGAVSMGNP HCVTVVDDVD NYDVDKYGPL
VEGHERFPER VNAGFMEIVS PSEIKLRVYE RGAGETQACG SGACAAVAVG IMQELLEEDV
KVSLPGGDLR IVWQGPGKPL FMTGPATHVY DGQLSI
|
|---|
| |