Gene VSAL_I0092 details

Gene Information

• Locus tag: VSAL_I0092
• Symbol: rep
• ID: 6986306
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011312
• Strand: +
• Start bp: 122717
• End bp: 124732
• Gene Length: 2016 bp
• Protein Length: 671 aa
• Translation table: 11
• GC content: 40%
• IMG OID: 643378481
• Product: ATP-dependent DNA helicase rep
• Protein accession: YP_002261644
• Protein GI: 209693716
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0210] Superfamily I DNA and RNA helicases
• TIGRFAM ID: [TIGR01074] ATP-dependent DNA helicase Rep

Plasmid Coverage information

• Num covering plasmid clones: 4
• Plasmid unclonability p-value: 0.157816
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGACTTA ACCCACAGCA AGATGAAGCC GTTAAGTTTG TTTCTGGGCC ATGTTTAGTA 
TTGGCAGGCG CAGGCTCAGG TAAAACTCGT GTAATTACGA ATAAAATAGC CTATCTAGTA 
CAACAATGCG GGTATAAAGC TCGCAATATT GCTGCGGTTA CCTTTACTAA TAAAGCGGCG 
AGAGAGATGA AAGAGCGTGT TGGGCAAACG CTGAACAAAC AAGAATCACG AGGGTTATTA 
GTATCAACAT TCCATTCTCT TGGATTAGAC ATTATTCGTC GTGAATATAA AATATTAGGC 
CTAAAGGCAG GTTTTTCTCT TTTTGATGAT CAAGACCAAT TAGCCTTATT AAAAGAACTG 
ACTGAAAAAC AAATTGATGG AGACAAGGAT CTACTACGTC AACTGCTTAG TTGTATTTCT 
AAGTGGAAGA CTGACATGCT TACCCCAGAT CAAGTTAAAG GCATTGTTCG CTCAGAGCAG 
GAGCAATTAT TTGCTTTCTG TTATGAGATG TATTTAACGC AAATGAAAGC GTATAACGCA 
TTAGATTTTG ATGATTTAAT CTCATTGCCG GTGTTATTGT TGAGAAATAA TCAGGATGTA 
CGTGAGCGTT GGCAGATGAA ACTTCGCTAT TTATTAGTGG ATGAATATCA AGATACCAAT 
ACTAGCCAAT ATGAATTAGT AAAATTGCTT GTTGGTGAAA GAGGTCGATT GACCGTAGTA 
GGAGATGATG ATCAATCTAT TTATTCGTGG CGTGGAGCAA AACCTCAAAA CCTTATTTTA 
TTGAGTGAAG ACTACCCTAA TTTGAAAGTC ATTAAATTAG AGCAGAATTA TCGTTCAACG 
AGTCGAATTT TACGTGCAGC CAACATACTG ATTGCTAATA ATCCTCATGC ATTTGAAAAA 
CGGTTATTTT CTGAAATCCC TGATGGTGAG CAGATAAAGA TTCTGACAGC GAAAGATGAT 
GCGCACGAAG CCGAACGAGT TGTCGGTGAG ATCATTGCTC ATCGTTTCCT TAATCGAACC 
GATTATAAAG ATTACGCAGT ACTTTATCGT GGGAATCATC AGTCTCGACT TATTGAAAAA 
TCACTAATGC AAAACCGCGT GCCTTATAAG ATTTCTGGGG GGACTTCCTT TTTCTCTCGT 
TCAGAAATCA AAGACATCAT GGCTTATCTT CGTCTTCTGA CTAACCCTGA TGACGATAAT 
GCGTTTTTGC GTGTCGTAAA CACACCTCGA CGTGAAATTG GCCCTGTTAC TTTAGAGAAG 
CTAGGTACGT ATGCCAACAT GCGTGGAAAA AGTTTGTTTG AAGCTTGTTT TGAAATGGGG 
TTAGAACAAA CCTTATCTGG TCGAGGGCTT GAGTCACTGC GTCGATTTGG TCATTGGGTT 
GTTTCTATAT CAGAAAATGC TGAGCGAGGT AATACCGTAG AGGCGGTGCG ATCACTAGTA 
AAAGACATTC ACTACGAAGA TTGGTTGTAC GAAACATCAC CTAGCGCGAA AGCTGCAGAA 
ATGCGCATGA AAAATGTATC TGATTTATAT TCTTGGATTG TGGCTGATTT AGAAGGTGAT 
AATTATGATA AAGAAGAGAA AACATTAAAA GAAGTCGTAT TGCGCTTAAC ACTGCGAGAT 
ATGATGGAGC GTGGAGAAGA TGAAGATGGT GCTGACCAAG TGCAGTTAAT GACATTGCAT 
GCATCAAAAG GCTTAGAATT CCCTTATGTG TATTTGATTG GGGCAGAAGA AGGTATTTTA 
CCGCATCAAA CCAGTGTTGA TGAAGACAAC GTAGAAGAAG AACGTCGTTT GGCGTATGTG 
GGTATTACGC GAGCAAAAAA AGAGCTGACT TTTACATTGT GTAAAGAGCG TCGTCAGTAT 
GGTGAGCTAA TTCGTCCCAC ACCAAGCCGT TTTTTAGAAG AGCTTCCGCA AGATGATTTA 
GATTGGGAAA TGAAAAAACC TAAGCCGACT CAAGAAGAGA GAATGGAAAA AGGGAAAAGT 
AATATTGCTC ATCTGCGTGC TATGTTGAAA AAATAG 

 

Protein sequence

MRLNPQQDEA VKFVSGPCLV LAGAGSGKTR VITNKIAYLV QQCGYKARNI AAVTFTNKAA 
REMKERVGQT LNKQESRGLL VSTFHSLGLD IIRREYKILG LKAGFSLFDD QDQLALLKEL 
TEKQIDGDKD LLRQLLSCIS KWKTDMLTPD QVKGIVRSEQ EQLFAFCYEM YLTQMKAYNA 
LDFDDLISLP VLLLRNNQDV RERWQMKLRY LLVDEYQDTN TSQYELVKLL VGERGRLTVV 
GDDDQSIYSW RGAKPQNLIL LSEDYPNLKV IKLEQNYRST SRILRAANIL IANNPHAFEK 
RLFSEIPDGE QIKILTAKDD AHEAERVVGE IIAHRFLNRT DYKDYAVLYR GNHQSRLIEK 
SLMQNRVPYK ISGGTSFFSR SEIKDIMAYL RLLTNPDDDN AFLRVVNTPR REIGPVTLEK 
LGTYANMRGK SLFEACFEMG LEQTLSGRGL ESLRRFGHWV VSISENAERG NTVEAVRSLV 
KDIHYEDWLY ETSPSAKAAE MRMKNVSDLY SWIVADLEGD NYDKEEKTLK EVVLRLTLRD 
MMERGEDEDG ADQVQLMTLH ASKGLEFPYV YLIGAEEGIL PHQTSVDEDN VEEERRLAYV 
GITRAKKELT FTLCKERRQY GELIRPTPSR FLEELPQDDL DWEMKKPKPT QEERMEKGKS 
NIAHLRAMLK K