| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VSAL_I0083 |
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| Symbol | aroE |
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| ID | 6986300 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Aliivibrio salmonicida LFI1238 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011312 |
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| Strand | + |
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| Start bp | 84984 |
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| End bp | 85805 |
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| Gene Length | 822 bp |
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| Protein Length | 273 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 643378446 |
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| Product | shikimate 5-dehydrogenase |
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| Protein accession | YP_002261635 |
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| Protein GI | 209693707 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0169] Shikimate 5-dehydrogenase |
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| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.59928 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGATAAGT ATGCAGTCTT TGGTCATCCC ATTAAGCAAA GCAAATCTCC TTTTATTCAT
ACATTATTCG CTCGTCAAAC AATACAACCT TTGGAATATG TTGCTATTGA GGCTCCAGTG
GATGGCTTTC TTAATTCGGT AACTCATTTT TTTTCTAATG GGGGTAAAGG CTGTAATATT
ACCGTACCCT TTAAAGAAGA AGCATTTCAA TTTGCCGATC AATTAACAGA TAGAGCAAAA
TTGGCTGGTG CGGTTAATAC GCTAAAAAAG CTGGATGATG GAATTATTCT CGGTGATAAC
ACGGACGGTG AAGGATTAGT TCAAGACTTA CTGCAATATC AGGTACCACT TCAAGATAAG
CGTATCTTAT TAATTGGAGC AGGAGGGGCA GCACGAGGTG TACTTCTTCC CTTATTAAAA
CAAAACCCCT CTTCTATTAC CGTAGTTAAT CGCACTTATG AAAAAGCAGA AGCACTAGCT
GAAATATTTT CAGCGTATGG TGCTGTAGAG GCGGTTCGCA TGAGTGACGT GACACGATCG
TTTGATGTGA TAATTAATTC AACGTCTGCC AGTTTATCTG GAGAGTTACC TAATATTAGT
CCAGTGATTT TTTCTAAAGG CAGTATCAGC TATGACATGA TGTATGGCAA AGGTAAAACG
GTCTTTAATC AATGGGCATT AGATAATGAT GTATACCAAG CTTATGATGG ATTAGGAATG
TTAGTTGGGC AAGCTGCGGA AAGCTTTACT GTATGGAGAG GATTACGTCC TAGCAGCAAA
CAAATACTAC GAGAACTTCG CAAAAATTTA GAAGGTATGT AA
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| Protein sequence | MDKYAVFGHP IKQSKSPFIH TLFARQTIQP LEYVAIEAPV DGFLNSVTHF FSNGGKGCNI
TVPFKEEAFQ FADQLTDRAK LAGAVNTLKK LDDGIILGDN TDGEGLVQDL LQYQVPLQDK
RILLIGAGGA ARGVLLPLLK QNPSSITVVN RTYEKAEALA EIFSAYGAVE AVRMSDVTRS
FDVIINSTSA SLSGELPNIS PVIFSKGSIS YDMMYGKGKT VFNQWALDND VYQAYDGLGM
LVGQAAESFT VWRGLRPSSK QILRELRKNL EGM
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